myRT

myRT report for GCA_002965395.1_ASM296539v1

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Seq: PTSW01000012.1 Escherichia sp. MOD1-EC5462 MOD1-EC5462_12_length_137581_cov_84.9843, whole genome shotgun sequence (137580 bp)
Overview 1 RT 1: 11131-17434 bp Neighborhood of RT #1 [11131, 17434] P Q RVT-Retrons Feature: gene Location: 11131-12897 bp Feature: domain Description: P Location: 11158-12892 bp Feature: domain Description: P Location: 1 1 1 58-1 2892 bp Feature: gene Location: 12897-13922 bp Feature: domain Description: Q Location: 12903-13917 bp Feature: domain Description: Q Location: 1 2903-1 391 7 bp Feature: gene Location: 13964-15904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14288-14912 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4288-1 491 2 bp Feature: gene Location: 15937-16098 bp Feature: gene Location: 16376-17434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons

Seq: PTSW01000025.1 Escherichia sp. MOD1-EC5462 MOD1-EC5462_25_length_63216_cov_87.6205, whole genome shotgun sequence (63216 bp)
Overview 1 RT 1: 60579-62702 bp Neighborhood of RT #1 [60579, 62935] RVT-Retrons Feature: gene Location: 60579-60770 bp Feature: gene Location: 60757-61434 bp Feature: gene Location: 61436-62935 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62147-62702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 147-62 702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PTSW01000002.1 Escherichia sp. MOD1-EC5462 MOD1-EC5462_2_length_262008_cov_80.5324, whole genome shotgun sequence (262008 bp)
Overview 1 RT 1: 106866-112416 bp Neighborhood of RT #1 [106866, 112416] ribA aconitase_1 RVT-GII GIIM RVT-GII Feature: gene Location: 106866-107519 bp Feature: domain Description: ribA Location: 106941-107511 bp Feature: domain Description: ribA Location: 106941-107511 bp Feature: gene Location: 107583-110258 bp Feature: domain Description: aconitase_1 Location: 107637-110253 bp Feature: domain Description: aconitase_1 Location: 10763 7-110253 bp Feature: gene Location: 110486-111319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110489-110906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110489-110906 bp Feature: domain Description: GIIM Note: maturase Location: 110954-111173 bp Feature: domain Description: GIIM Note: maturase Location: 110954-111173 bp Feature: gene Location: 111320-111526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111329-111521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1113 29-111521 bp Feature: gene Location: 111616-111837 bp Feature: gene Location: 111820-112416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388)

Seq: PTSW01000064.1 Escherichia sp. MOD1-EC5462 MOD1-EC5462_64_length_3594_cov_76.282, whole genome shotgun sequence (3594 bp)
Overview 1 RT 1: 542-2962 bp Neighborhood of RT #1 [542, 2962] RVT-Retrons HTH_XRE Feature: gene Location: 542-736 bp Feature: gene Location: 735-1172 bp Feature: gene Location: 1297-2247 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1477-2020 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 77-2020 bp Feature: gene Location: 2225-2545 bp Feature: domain Description: HTH_XRE Location: 2249-2414 bp Feature: domain Description: HTH_XRE Location: 224 9-24 14 bp Feature: gene Location: 2570-2962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)