myRT

myRT report for GCA_002965565.1_ASM296556v1

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Seq: PTRY01000013.1 Escherichia sp. MOD1-EC4560 EC4560_13, whole genome shotgun sequence (155230 bp)
Overview 1 RT 1: 14653-20885 bp Neighborhood of RT #1 [14653, 21022] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 14653-14907 bp Feature: domain Description: Phage_integrase Location: 14719-14815 bp Feature: domain Description: Phage_integrase Location: 1 471 9-1 481 5 bp Feature: gene Location: 14990-15460 bp Feature: gene Location: 15807-19016 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16335-16824 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 6335-1 6824 bp Feature: domain Description: nitrilase Location: 18330-18927 bp Feature: domain Description: nitrilase Location: 1 8330-1 8927 bp Feature: gene Location: 19333-20115 bp Feature: domain Description: AbiEi_3_N Location: 19339-19606 bp Feature: domain Description: AbiEi_3_N Location: 1 9339-1 9606 bp Feature: domain Description: AbiEi_3 Location: 19618-20074 bp Feature: domain Description: AbiEi_3 Location: 1 961 8-20074 bp Feature: gene Location: 20102-21022 bp Feature: domain Description: AbiEii Location: 20144-20885 bp Feature: domain Description: AbiEii Location: 201 44-20885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: PTRY01000057.1 Escherichia sp. MOD1-EC4560 EC4560_57, whole genome shotgun sequence (53855 bp)
Overview 1 RT 1: 9768-13646 bp Neighborhood of RT #1 [9768, 13651] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9768-10226 bp Feature: domain Description: dut Location: 9774-10221 bp Feature: domain Description: dut Location: 9774-102 2 1 bp Feature: gene Location: 10332-10928 bp Feature: domain Description: slmA Location: 10338-10914 bp Feature: domain Description: slmA Location: 10338-10914 bp Feature: gene Location: 10972-11931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11107-11656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11107-11656 bp Feature: gene Location: 12228-12884 bp Feature: domain Description: pyrE Location: 12246-12879 bp Feature: domain Description: pyrE Location: 12 2 46-12 879 bp Feature: gene Location: 12935-13651 bp Feature: domain Description: rph Location: 12938-13646 bp Feature: domain Description: rph Location: 12 938-13646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PTRY01000092.1 Escherichia sp. MOD1-EC4560 EC4560_92, whole genome shotgun sequence (6286 bp)
Overview 1 RT 1: 84-1248 bp Neighborhood of RT #1 [84, 1248] HTH_28 HTH_28 RVT-GII GIIM Feature: gene Location: 84-506 bp Feature: domain Description: HTH_28 Location: 90-174 bp Feature: domain Description: HTH_28 Location: 90-174 bp Feature: domain Description: HTH_28 Location: 192-333 bp Feature: domain Description: HTH_28 Location: 192-3 3 3 bp Feature: gene Location: 554-862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563 -809 bp Feature: gene Location: 907-1080 bp Feature: domain Description: GIIM Note: maturase Location: 952-1075 bp Feature: domain Description: GIIM Note: maturase Location: 952-1075 bp Feature: gene Location: 1096-1248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, GIIM (pfam08388)