myRT

myRT report for GCA_002965585.1_ASM296558v1

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Seq: PTRP01000012.1 Escherichia sp. MOD1-EC2449 MOD1-EC2449_12_length_142035_cov_33.3945, whole genome shotgun sequence (142035 bp)
Overview 1 RT 1: 102570-108602 bp Neighborhood of RT #1 [102570, 108602] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 102570-103490 bp Feature: domain Description: AbiEii Location: 102612-103353 bp Feature: domain Description: AbiEii Location: 1 0261 2-1 03353 bp Feature: gene Location: 103477-104259 bp Feature: domain Description: AbiEi_3_N Location: 103483-103750 bp Feature: domain Description: AbiEi_3_N Location: 1 03483-1 03750 bp Feature: domain Description: AbiEi_3 Location: 103762-104218 bp Feature: domain Description: AbiEi_3 Location: 1 03762-1 0421 8 bp Feature: gene Location: 104576-107785 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 105104-105593 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 051 04-1 05593 bp Feature: domain Description: nitrilase Location: 107099-107696 bp Feature: domain Description: nitrilase Location: 1 07099-1 07696 bp Feature: gene Location: 107946-108086 bp Feature: domain Description: Phage_ASH Location: 107970-108066 bp Feature: domain Description: Phage_ASH Location: 1 07970-1 08066 bp Feature: gene Location: 108132-108602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: PTRP01000031.1 Escherichia sp. MOD1-EC2449 MOD1-EC2449_31_length_53565_cov_34.6636, whole genome shotgun sequence (53565 bp)
Overview 1 RT 1: 9773-13651 bp Neighborhood of RT #1 [9773, 13656] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9773-10231 bp Feature: domain Description: dut Location: 9779-10226 bp Feature: domain Description: dut Location: 9779-102 2 6 bp Feature: gene Location: 10337-10933 bp Feature: domain Description: slmA Location: 10343-10919 bp Feature: domain Description: slmA Location: 10343-10919 bp Feature: gene Location: 10977-11936 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11112-11661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11112 -11661 bp Feature: gene Location: 12233-12889 bp Feature: domain Description: pyrE Location: 12251-12884 bp Feature: domain Description: pyrE Location: 12 2 51-12 884 bp Feature: gene Location: 12940-13656 bp Feature: domain Description: rph Location: 12943-13651 bp Feature: domain Description: rph Location: 12 943-13651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PTRP01000068.1 Escherichia sp. MOD1-EC2449 MOD1-EC2449_68_length_6314_cov_29.3869, whole genome shotgun sequence (6314 bp)
Overview 1 RT 1: 98-1262 bp Neighborhood of RT #1 [98, 1262] HTH_28 HTH_28 RVT-GII GIIM Feature: gene Location: 98-520 bp Feature: domain Description: HTH_28 Location: 104-188 bp Feature: domain Description: HTH_28 Location: 104-188 bp Feature: domain Description: HTH_28 Location: 206-347 bp Feature: domain Description: HTH_28 Location: 206-3 47 bp Feature: gene Location: 568-876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-823 bp Feature: gene Location: 921-1094 bp Feature: domain Description: GIIM Note: maturase Location: 966-1089 bp Feature: domain Description: GIIM Note: maturase Location: 966-1089 bp Feature: gene Location: 1110-1262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, GIIM (pfam08388)