myRT

myRT report for GCA_002965595.1_ASM296559v1

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Seq: PTRN01000010.1 Escherichia sp. MOD1-EC4550 EC4550_10, whole genome shotgun sequence (75179 bp)
Overview 1 RT 1: 30097-33976 bp Neighborhood of RT #1 [30097, 33981] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 30097-30555 bp Feature: domain Description: dut Location: 30103-30550 bp Feature: domain Description: dut Location: 301 03-30550 bp Feature: gene Location: 30662-31258 bp Feature: domain Description: slmA Location: 30668-31244 bp Feature: domain Description: slmA Location: 30668-31 244 bp Feature: gene Location: 31302-32261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31437-31986 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 437-31 986 bp Feature: gene Location: 32558-33214 bp Feature: domain Description: pyrE Location: 32576-33209 bp Feature: domain Description: pyrE Location: 32576-33209 bp Feature: gene Location: 33265-33981 bp Feature: domain Description: rph Location: 33268-33976 bp Feature: domain Description: rph Location: 33268-33976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PTRN01000022.1 Escherichia sp. MOD1-EC4550 EC4550_22, whole genome shotgun sequence (307812 bp)
Overview 1 RT 1: 108402-112278 bp Neighborhood of RT #1 [108402, 112370] LbH_MAT_like RVT-GII GIIM DDE_Tnp_1_assoc YhhI YhhI YhhI Feature: gene Location: 108402-108818 bp Feature: domain Description: LbH_MAT_like Location: 108414-108759 bp Feature: domain Description: LbH_MAT_like Location: 108414-108759 bp Feature: gene Location: 109527-109892 bp Feature: gene Location: 109951-111027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109981-110638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109981-110638 bp Feature: domain Description: GIIM Note: maturase Location: 110728-110935 bp Feature: domain Description: GIIM Note: maturase Location: 11072 8-110935 bp Feature: gene Location: 111234-111416 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 111255-111414 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 1112 55-111414 bp Feature: gene Location: 111513-112370 bp Feature: domain Description: YhhI Location: 111516-111600 bp Feature: domain Description: YhhI Location: 111516-111600 bp Feature: domain Description: YhhI Location: 111657-112011 bp Feature: domain Description: YhhI Location: 111657-112 011 bp Feature: domain Description: YhhI Location: 112029-112278 bp Feature: domain Description: YhhI Location: 112 02 9-112 2 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_MAT_like (cd04647), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)

Seq: PTRN01000031.1 Escherichia sp. MOD1-EC4550 EC4550_31, whole genome shotgun sequence (37489 bp)
Overview 1 RT 1: 11142-16420 bp Neighborhood of RT #1 [11142, 16437] TIGR02270 TIGR02270 TRX_family RVT-GII RVT-GII YhhI YhhI YhhI IS285 Feature: gene Location: 11142-12377 bp Feature: domain Description: TIGR02270 Location: 11160-11778 bp Feature: domain Description: TIGR02270 Location: 11160-11778 bp Feature: domain Description: TIGR02270 Location: 11997-12330 bp Feature: domain Description: TIGR02270 Location: 11997-123 3 0 bp Feature: gene Location: 12389-12802 bp Feature: domain Description: TRX_family Location: 12446-12644 bp Feature: domain Description: TRX_family Location: 12446-12644 bp Feature: gene Location: 13715-14260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13994-14234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 994-1423 4 bp Feature: gene Location: 14193-14783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14232-14652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423 2-14652 bp Feature: gene Location: 14891-16027 bp Feature: domain Description: YhhI Location: 14894-15257 bp Feature: domain Description: YhhI Location: 14894-15257 bp Feature: domain Description: YhhI Location: 15314-15668 bp Feature: domain Description: YhhI Location: 153 14-15668 bp Feature: domain Description: YhhI Location: 15686-15929 bp Feature: domain Description: YhhI Location: 15686-15929 bp Feature: gene Location: 16042-16437 bp Feature: domain Description: IS285 Location: 16048-16420 bp Feature: domain Description: IS285 Location: 16048-16420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02270 (conserved hypothetical protein), TRX_family (cd02947), RVT-GII, YhhI (COG5433), IS285 (COG3328)