myRT

myRT report for GCA_002965785.1_ASM296578v1

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Seq: PTSA01000106.1 Escherichia sp. MOD1-EC6163 MOD1-EC6163_106_length_1949_cov_84.5346, whole genome shotgun sequence (1949 bp)
Overview 1 RT 1: 67-1736 bp Neighborhood of RT #1 [67, 1948] RVT-UG4 Feature: gene Location: 67-327 bp Feature: gene Location: 594-1508 bp Feature: gene Location: 1505-1948 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1508-1736 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 508-1 736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: PTSA01000021.1 Escherichia sp. MOD1-EC6163 MOD1-EC6163_21_length_101368_cov_29.3824, whole genome shotgun sequence (101368 bp)
Overview 1 RT 1: 26577-31842 bp Neighborhood of RT #1 [26577, 31850] RVT-GII GIIM aconitase_1 ribA Feature: gene Location: 26577-26771 bp Feature: gene Location: 26879-27100 bp Feature: gene Location: 27190-28230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27199-27814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7199-2 7814 bp Feature: domain Description: GIIM Note: maturase Location: 27865-28084 bp Feature: domain Description: GIIM Note: maturase Location: 2 7865-2 8084 bp Feature: gene Location: 28458-31133 bp Feature: domain Description: aconitase_1 Location: 28512-31128 bp Feature: domain Description: aconitase_1 Location: 2 8512 -3112 8 bp Feature: gene Location: 31197-31850 bp Feature: domain Description: ribA Location: 31272-31842 bp Feature: domain Description: ribA Location: 312 72 -31842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505)

Seq: PTSA01000042.1 Escherichia sp. MOD1-EC6163 MOD1-EC6163_42_length_23100_cov_64.6792, whole genome shotgun sequence (23100 bp)
Overview 1 RT 1: 2052-4619 bp Neighborhood of RT #1 [2052, 4619] Y2_Tnp RVT_N RVT-GII Feature: gene Location: 2052-2183 bp Feature: gene Location: 2256-2888 bp Feature: domain Description: Y2_Tnp Location: 2265-2667 bp Feature: domain Description: Y2_Tnp Location: 2265-2667 bp Feature: gene Location: 3068-4060 bp Feature: domain Description: RVT_N Location: 3125-3362 bp Feature: domain Description: RVT_N Location: 3 125-3 3 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3413-4052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 413 -4052 bp Feature: gene Location: 4101-4241 bp Feature: gene Location: 4323-4619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT_N (pfam13655), RVT-GII

Seq: PTSA01000068.1 Escherichia sp. MOD1-EC6163 MOD1-EC6163_68_length_7130_cov_30.8424, whole genome shotgun sequence (7130 bp)
Overview 1 RT 1: 1-2767 bp Neighborhood of RT #1 [1, 2767] DDE_Tnp_IS66_C RVT-UG4 Feature: gene Location: 1-174 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 40-151 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4 0-151 bp Feature: gene Location: 302-547 bp Feature: gene Location: 611-1573 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 962-1358 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 962-1358 bp Feature: gene Location: 1570-2427 bp Feature: gene Location: 2504-2767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-UG4

Seq: PTSA01000071.1 Escherichia sp. MOD1-EC6163 MOD1-EC6163_71_length_6545_cov_68.2783, whole genome shotgun sequence (6545 bp)
Overview 1 RT 1: 1655-5465 bp Neighborhood of RT #1 [1655, 5465] RVT-UG4 RVT-UG4 Feature: gene Location: 1655-2557 bp Feature: gene Location: 3418-3546 bp Feature: gene Location: 3609-4133 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3957-4104 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 395 7-4104 bp Feature: gene Location: 4214-4561 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4217-4370 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4217-4370 bp Feature: gene Location: 4806-5069 bp Feature: gene Location: 5082-5465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4