myRT

myRT report for GCA_002965885.1_ASM296588v1

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Seq: PTSL01000012.1 Escherichia sp. MOD1-EC6100 MOD1-EC6100_12_length_133646_cov_33.9982, whole genome shotgun sequence (133646 bp)
Overview 1 RT 1: 36392-40876 bp Neighborhood of RT #1 [36392, 40968] PRK09692 RVT-UG15 Psu PRK09678 PRK09678 Feature: gene Location: 36392-36691 bp Feature: gene Location: 36755-37924 bp Feature: domain Description: PRK09692 Location: 36764-37907 bp Feature: domain Description: PRK09692 Location: 36764-37907 bp Feature: gene Location: 37942-39552 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 38350-38773 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 38350-38773 bp Feature: gene Location: 39876-40448 bp Feature: domain Description: Psu Location: 39894-40431 bp Feature: domain Description: Psu Location: 39894-40431 bp Feature: gene Location: 40522-40968 bp Feature: domain Description: PRK09678 Location: 40531-40603 bp Feature: domain Description: PRK09678 Location: 40531 -40603 bp Feature: domain Description: PRK09678 Location: 40726-40876 bp Feature: domain Description: PRK09678 Location: 40726-40876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG15, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: PTSL01000002.1 Escherichia sp. MOD1-EC6100 MOD1-EC6100_2_length_320697_cov_35.3679, whole genome shotgun sequence (320697 bp)
Overview 1 RT 1: 257719-263296 bp Neighborhood of RT #1 [257719, 263304] RVT-GII GIIM aconitase_1 ribA Feature: gene Location: 257719-257865 bp Feature: gene Location: 258030-258224 bp Feature: gene Location: 258332-259684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258653-259271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58653-2 592 71 bp Feature: domain Description: GIIM Note: maturase Location: 259319-259538 bp Feature: domain Description: GIIM Note: maturase Location: 2 59319-2 59538 bp Feature: gene Location: 259912-262587 bp Feature: domain Description: aconitase_1 Location: 259966-262582 bp Feature: domain Description: aconitase_1 Location: 2 59966-2 62 582 bp Feature: gene Location: 262651-263304 bp Feature: domain Description: ribA Location: 262726-263296 bp Feature: domain Description: ribA Location: 2 62 72 6-2 632 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505)

Seq: PTSL01000039.1 Escherichia sp. MOD1-EC6100 MOD1-EC6100_39_length_21333_cov_77.4901, whole genome shotgun sequence (21333 bp)
Overview 1 RT 1: 18274-21331 bp Neighborhood of RT #1 [18274, 21331] RVT_N RVT-GII Y2_Tnp Feature: gene Location: 18274-18531 bp Feature: gene Location: 18957-19097 bp Feature: gene Location: 19119-20111 bp Feature: domain Description: RVT_N Location: 19176-19413 bp Feature: domain Description: RVT_N Location: 19176-19413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19464-20103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19464-20103 bp Feature: gene Location: 20291-21064 bp Feature: domain Description: Y2_Tnp Location: 20303-20843 bp Feature: domain Description: Y2_Tnp Location: 203 03 -20843 bp Feature: gene Location: 21071-21331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Y2_Tnp (pfam04986)