myRT

myRT report for GCA_002966025.1_ASM296602v1

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Seq: PTTB01000010.1 Escherichia sp. MOD1-EC5426 MOD1-EC5426_10_length_133417_cov_70.1646, whole genome shotgun sequence (133417 bp)
Overview 1 RT 1: 130235-133122 bp Neighborhood of RT #1 [130235, 133415] DinI RVT-Retrons Feature: gene Location: 130235-130468 bp Feature: domain Description: DinI Location: 130277-130463 bp Feature: domain Description: DinI Location: 1 30277-1 30463 bp Feature: gene Location: 130644-131702 bp Feature: gene Location: 132174-133415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132498-133122 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 32498-1 331 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons

Seq: PTTB01000011.1 Escherichia sp. MOD1-EC5426 MOD1-EC5426_11_length_133394_cov_58.2356, whole genome shotgun sequence (133394 bp)
Overview 1 RT 1: 126172-130240 bp Neighborhood of RT #1 [126172, 130290] TIGR02646 COG3950 COG3950 RVT-Retrons DEDD_Tnp_IS110 Feature: gene Location: 126172-126822 bp Feature: domain Description: TIGR02646 Location: 126238-126637 bp Feature: domain Description: TIGR02 646 Location: 12 62 38-12 6637 bp Feature: gene Location: 126825-128477 bp Feature: domain Description: COG3950 Location: 127023-127176 bp Feature: domain Description: COG3950 Location: 12 702 3-12 7176 bp Feature: domain Description: COG3950 Location: 127404-128325 bp Feature: domain Description: COG3950 Location: 12 7404-12 832 5 bp Feature: gene Location: 128474-129409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128576-129176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 8576-12 9176 bp Feature: gene Location: 129424-129558 bp Feature: gene Location: 129973-130290 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 130012-130240 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 130012 -1302 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DEDD_Tnp_IS110 (pfam01548)

Seq: PTTB01000001.1 Escherichia sp. MOD1-EC5426 MOD1-EC5426_1_length_334011_cov_63.9891, whole genome shotgun sequence (334011 bp)
Overview 1 RT 1: 246475-251740 bp Neighborhood of RT #1 [246475, 251748] RVT-GII RVT-GII GIIM aconitase_1 ribA Feature: gene Location: 246475-246669 bp Feature: gene Location: 246777-246998 bp Feature: gene Location: 247088-247294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247097-247289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247097-247289 bp Feature: gene Location: 247295-248128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247298-247715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247298-247715 bp Feature: domain Description: GIIM Note: maturase Location: 247763-247982 bp Feature: domain Description: GIIM Note: maturase Location: 247763 -247982 bp Feature: gene Location: 248356-251031 bp Feature: domain Description: aconitase_1 Location: 248410-251026 bp Feature: domain Description: aconitase_1 Location: 248410-251026 bp Feature: gene Location: 251095-251748 bp Feature: domain Description: ribA Location: 251170-251740 bp Feature: domain Description: ribA Location: 251170-251740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505)