myRT

myRT report for GCA_002966045.1_ASM296604v1

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Seq: PTRX01000012.1 Escherichia sp. MOD1-EC5189 MOD1-EC5189_12_length_144504_cov_80.3764, whole genome shotgun sequence (144504 bp)
Overview 1 RT 1: 105458-109337 bp Neighborhood of RT #1 [105458, 109342] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 105458-105916 bp Feature: domain Description: dut Location: 105464-105911 bp Feature: domain Description: dut Location: 1 05464-1 0591 1 bp Feature: gene Location: 106023-106619 bp Feature: domain Description: slmA Location: 106029-106605 bp Feature: domain Description: slmA Location: 1 06029-1 06605 bp Feature: gene Location: 106663-107622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106798-107347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 06798-1 07347 bp Feature: gene Location: 107919-108575 bp Feature: domain Description: pyrE Location: 107937-108570 bp Feature: domain Description: pyrE Location: 1 07937-1 08570 bp Feature: gene Location: 108626-109342 bp Feature: domain Description: rph Location: 108629-109337 bp Feature: domain Description: rph Location: 1 08629-1 09337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PTRX01000001.1 Escherichia sp. MOD1-EC5189 MOD1-EC5189_1_length_317834_cov_78.8685, whole genome shotgun sequence (317834 bp)
Overview 1 RT 1: 40528-49350 bp Neighborhood of RT #1 [40528, 49352] PAAR_RHS RHS_repeat RhsA YD_repeat_2x RhsA RhsA RhsA RVT-GII GIIM PRK10438 PRK09993 Feature: gene Location: 40528-45054 bp Feature: domain Description: PAAR_RHS Location: 40864-41308 bp Feature: domain Description: PAAR_RHS Location: 40864-41308 bp Feature: domain Description: RHS_repeat Location: 41833-41923 bp Feature: domain Description: RHS_repeat Location: 41833-4192 3 bp Feature: domain Description: RhsA Location: 42118-42574 bp Feature: domain Description: RhsA Location: 42 118-42 574 bp Feature: domain Description: YD_repeat_2x Location: 42622-42709 bp Feature: domain Description: YD_repeat_2 x Location: 42 62 2 -42 709 bp Feature: domain Description: RhsA Location: 42796-43243 bp Feature: domain Description: RhsA Location: 42 796-432 43 bp Feature: domain Description: RhsA Location: 43285-43516 bp Feature: domain Description: RhsA Location: 432 85-43516 bp Feature: domain Description: RhsA Location: 43699-44914 bp Feature: domain Description: RhsA Location: 43699-44914 bp Feature: gene Location: 45075-45464 bp Feature: gene Location: 45823-47322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46276-46933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 76-46933 bp Feature: domain Description: GIIM Note: maturase Location: 47023-47230 bp Feature: domain Description: GIIM Note: maturase Location: 4702 3-472 30 bp Feature: gene Location: 47955-48725 bp Feature: domain Description: PRK10438 Location: 47958-48720 bp Feature: domain Description: PRK10438 Location: 47958-4872 0 bp Feature: gene Location: 48879-49352 bp Feature: domain Description: PRK09993 Location: 48894-49350 bp Feature: domain Description: PRK09993 Location: 48894-49350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_RHS (cd14742), RHS_repeat (pfam05593), RhsA (COG3209), YD_repeat_2x (TIGR01643), RVT-GII, GIIM (pfam08388), PRK10438 (C-N hydrolase family amidase; Provisional), PRK09993 (C-lysozyme inhibitor; Provisional)