myRT

myRT report for GCA_002966085.1_ASM296608v1

Download annotations/find similar RTs

Seq: PTTC01000030.1 Escherichia sp. MOD1-EC5110 MOD1-EC5110_30_length_45782_cov_48.6507, whole genome shotgun sequence (45780 bp)
Overview 1 RT 1: 27250-32627 bp Neighborhood of RT #1 [27250, 32761] RfaF RVT-Retrons ABC_ATPase ABC_ATPase Phage_int_SAM_2 Integrase_1 Feature: gene Location: 27250-28308 bp Feature: domain Description: RfaF Location: 27403-28261 bp Feature: domain Description: RfaF Location: 27403-28261 bp Feature: gene Location: 28730-28951 bp Feature: gene Location: 29139-30110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29271-29838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29271 -29838 bp Feature: gene Location: 30107-31435 bp Feature: domain Description: ABC_ATPase Location: 30161-30254 bp Feature: domain Description: ABC_ATPase Location: 301 61 -30254 bp Feature: domain Description: ABC_ATPase Location: 30650-30845 bp Feature: domain Description: ABC_ATPase Location: 30650-30845 bp Feature: gene Location: 31877-32761 bp Feature: domain Description: Phage_int_SAM_2 Location: 31880-32150 bp Feature: domain Description: Phage_int_SAM_2 Location: 31 880-321 50 bp Feature: domain Description: Integrase_1 Location: 32183-32627 bp Feature: domain Description: Integrase_1 Location: 321 83-32627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RfaF (COG0859), RVT-Retrons, ABC_ATPase (pfam09818), Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835)

Seq: PTTC01000049.1 Escherichia sp. MOD1-EC5110 MOD1-EC5110_49_length_13272_cov_90.7343, whole genome shotgun sequence (13272 bp)
Overview 1 RT 1: 9713-13269 bp Neighborhood of RT #1 [9713, 13269] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9713-9946 bp Feature: domain Description: DUF905 Location: 9743-9941 bp Feature: domain Description: DUF905 Location: 9743-9941 bp Feature: gene Location: 10003-10452 bp Feature: domain Description: PRK13732 Location: 10009-10450 bp Feature: domain Description: PRK13732 Location: 10009-10450 bp Feature: gene Location: 10647-12548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10914-11745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10914-11745 bp Feature: domain Description: Intron_maturas2 Location: 11859-12117 bp Feature: domain Description: Intron_maturas2 Location: 11859-12 117 bp Feature: domain Description: HNHc Note: nucleases Location: 12291-12453 bp Feature: domain Description: HNHc Note: nucleases Location: 12 2 91-12 453 bp Feature: gene Location: 13111-13269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006)

Seq: PTTC01000004.1 Escherichia sp. MOD1-EC5110 MOD1-EC5110_4_length_275271_cov_48.4549, whole genome shotgun sequence (275271 bp)
Overview 1 RT 1: 89104-94907 bp Neighborhood of RT #1 [89104, 94907] ribA aconitase_1 RVT-GII GIIM Feature: gene Location: 89104-89757 bp Feature: domain Description: ribA Location: 89179-89749 bp Feature: domain Description: ribA Location: 89179-89749 bp Feature: gene Location: 89821-92496 bp Feature: domain Description: aconitase_1 Location: 89875-92491 bp Feature: domain Description: aconitase_1 Location: 89875-92491 bp Feature: gene Location: 92788-94077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93109-93727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 109-93 727 bp Feature: domain Description: GIIM Note: maturase Location: 93775-93994 bp Feature: domain Description: GIIM Note: maturase Location: 93 775-93 994 bp Feature: gene Location: 94096-94656 bp Feature: gene Location: 94737-94907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388)