myRT

myRT report for GCA_002967235.1_BS979

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Seq: PUGT01000495.1 Shigella dysenteriae strain BS979 CFSAN003701_1811, whole genome shotgun sequence (12885 bp)
Overview 1 RT 1: 5232-8044 bp Neighborhood of RT #1 [5232, 8044] COG3547 RVT-GII GIIM Feature: gene Location: 5232-5717 bp Feature: domain Description: COG3547 Location: 5250-5703 bp Feature: domain Description: COG3547 Location: 5250-5703 bp Feature: gene Location: 5813-5980 bp Feature: gene Location: 6006-7139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6108-6762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 08-6762 bp Feature: domain Description: GIIM Note: maturase Location: 6840-7062 bp Feature: domain Description: GIIM Note: maturase Location: 6840-7062 bp Feature: gene Location: 7234-7653 bp Feature: gene Location: 7703-8044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: PUGT01000620.1 Shigella dysenteriae strain BS979 CFSAN003701_2116, whole genome shotgun sequence (1307 bp)
Overview 1 RT 1: 146-1303 bp Neighborhood of RT #1 [146, 1305] RVT-GII Tra5 DDE_Tnp_IS1 Feature: gene Location: 146-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-764 bp Feature: gene Location: 806-1027 bp Feature: domain Description: Tra5 Location: 818-1010 bp Feature: domain Description: Tra5 Location: 818-1010 bp Feature: gene Location: 1153-1305 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1156-1303 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1156-1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-GII, Tra5 (COG2801)

Seq: PUGT01000146.1 Shigella dysenteriae strain BS979 CFSAN003701_651, whole genome shotgun sequence (9037 bp)
Overview 1 RT 1: 1-5213 bp Neighborhood of RT #1 [1, 5305] PRK10597 RVT-Retrons TIR_2 Caudo_TAP 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 1-198 bp Feature: gene Location: 282-542 bp Feature: domain Description: PRK10597 Location: 285-525 bp Feature: domain Description: PRK10597 Location: 285-525 bp Feature: gene Location: 902-2506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1193-1784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1193 -1784 bp Feature: domain Description: TIR_2 Location: 2111-2399 bp Feature: domain Description: TIR_2 Location: 2111-23 99 bp Feature: gene Location: 2952-3536 bp Feature: domain Description: Caudo_TAP Location: 3168-3525 bp Feature: domain Description: Caudo_TAP Location: 3 168-3 525 bp Feature: gene Location: 3536-5305 bp Feature: domain Description: 34 Location: 4058-4397 bp Feature: domain Description: 3 4 Location: 4058-43 97 bp Feature: domain Description: Collar Location: 4676-4814 bp Feature: domain Description: Collar Location: 4676-4814 bp Feature: domain Description: Phage_fiber Location: 4865-4904 bp Feature: domain Description: Phage_fiber Location: 4865-4904 bp Feature: domain Description: Phage_fiber Location: 4961-5000 bp Feature: domain Description: Phage_fiber Location: 4961-5000 bp Feature: domain Description: Phage_fiber Location: 5006-5033 bp Feature: domain Description: Phage_fiber Location: 5006-503 3 bp Feature: domain Description: Phage_fiber Location: 5108-5147 bp Feature: domain Description: Phage_fiber Location: 5108-5147 bp Feature: domain Description: Phage_fiber Location: 5180-5213 bp Feature: domain Description: Phage_fiber Location: 5180-5213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), RVT-Retrons, TIR_2 (pfam13676)