myRT

myRT report for GCA_002967245.1_BS983

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Seq: PUGP01000706.1 Shigella dysenteriae strain BS983 CFSAN003702_2065, whole genome shotgun sequence (41694 bp)
Overview 1 RT 1: 21528-24632 bp Neighborhood of RT #1 [21528, 24637] dut slmA RVT-Retrons pyrE Feature: gene Location: 21528-21986 bp Feature: domain Description: dut Location: 21534-21981 bp Feature: domain Description: dut Location: 21 534-21 981 bp Feature: gene Location: 22093-22689 bp Feature: domain Description: slmA Location: 22099-22675 bp Feature: domain Description: slmA Location: 22099-22675 bp Feature: gene Location: 23018-23527 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23024-23519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23024-2351 9 bp Feature: gene Location: 23570-23848 bp Feature: gene Location: 23981-24637 bp Feature: domain Description: pyrE Location: 23999-24632 bp Feature: domain Description: pyrE Location: 23999-24632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: PUGP01000819.1 Shigella dysenteriae strain BS983 CFSAN003702_2603, whole genome shotgun sequence (1264 bp)
Overview 1 RT 1: 3-1248 bp Neighborhood of RT #1 [3, 1262] RVT-GII PHA02517 Feature: gene Location: 3-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 04-2 82 bp Feature: gene Location: 855-1049 bp Feature: gene Location: 1077-1262 bp Feature: domain Description: PHA02517 Location: 1080-1248 bp Feature: domain Description: PHA02 517 Location: 1080-12 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: PUGP01000829.1 Shigella dysenteriae strain BS983 CFSAN003702_2702, whole genome shotgun sequence (3242 bp)
Overview 1 RT 1: 103-2613 bp Neighborhood of RT #1 [103, 2633] RVT-GII GIIM COG3547 sopB_N HTH_24 ParB Feature: gene Location: 103-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-43 6 bp Feature: domain Description: GIIM Note: maturase Location: 514-736 bp Feature: domain Description: GIIM Note: maturase Location: 514-73 6 bp Feature: gene Location: 1215-1700 bp Feature: domain Description: COG3547 Location: 1233-1686 bp Feature: domain Description: COG3 547 Location: 123 3 -1686 bp Feature: gene Location: 1956-2633 bp Feature: domain Description: sopB_N Location: 1959-2025 bp Feature: domain Description: sopB_N Location: 1959-2025 bp Feature: domain Description: HTH_24 Location: 2127-2202 bp Feature: domain Description: HTH_24 Location: 2127-2202 bp Feature: domain Description: ParB Location: 2238-2613 bp Feature: domain Description: ParB Location: 223 8-2613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), HTH_24 (pfam13412), ParB (smart00470)