myRT

myRT report for GCA_002967275.1_BS978

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Seq: PUGU01000035.1 Shigella dysenteriae strain BS978 CFSAN003844_133, whole genome shotgun sequence (20758 bp)
Overview 1 RT 1: 630-3734 bp Neighborhood of RT #1 [630, 3739] dut slmA RVT-Retrons pyrE Feature: gene Location: 630-1088 bp Feature: domain Description: dut Location: 636-1083 bp Feature: domain Description: dut Location: 636-1 083 bp Feature: gene Location: 1195-1791 bp Feature: domain Description: slmA Location: 1201-1777 bp Feature: domain Description: slmA Location: 1 201 -1 777 bp Feature: gene Location: 2120-2629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2126-2621 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 26-2621 bp Feature: gene Location: 2672-2950 bp Feature: gene Location: 3083-3739 bp Feature: domain Description: pyrE Location: 3101-3734 bp Feature: domain Description: pyrE Location: 31 01 -3734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), dut (TIGR00576)

Seq: PUGU01000447.1 Shigella dysenteriae strain BS978 CFSAN003844_1414, whole genome shotgun sequence (3380 bp)
Overview 1 RT 1: 3-3078 bp Neighborhood of RT #1 [3, 3122] PRK08943 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 3-782 bp Feature: domain Description: PRK08943 Location: 9-777 bp Feature: domain Description: PRK08943 Location: 9-777 bp Feature: gene Location: 956-1624 bp Feature: domain Description: HTH_23 Location: 1064-1151 bp Feature: domain Description: HTH_2 3 Location: 1064-1151 bp Feature: domain Description: InsE Location: 1283-1475 bp Feature: domain Description: InsE Location: 12 83-1475 bp Feature: gene Location: 1766-1978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769-1970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769-1970 bp Feature: gene Location: 1988-2416 bp Feature: gene Location: 2430-3122 bp Feature: domain Description: DDE_Tnp_1 Location: 2436-3078 bp Feature: domain Description: DDE_Tnp_1 Location: 2 436-3078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_23 (pfam13384), InsE (COG2963)

Seq: PUGU01000151.1 Shigella dysenteriae strain BS978 CFSAN003844_625, whole genome shotgun sequence (6141 bp)
Overview 1 RT 1: 1-2856 bp Neighborhood of RT #1 [1, 2870] PHA02517 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-189 bp Feature: domain Description: PHA02517 Location: 4-175 bp Feature: domain Description: PHA02517 Location: 4-175 bp Feature: gene Location: 271-402 bp Feature: domain Description: DDE_Tnp_IS66 Location: 283-376 bp Feature: domain Description: DDE_Tnp_IS66 Location: 283 -3 76 bp Feature: gene Location: 864-1373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065-1368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065-13 68 bp Feature: gene Location: 1386-2096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1398-1719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 98-1719 bp Feature: domain Description: GIIM Note: maturase Location: 1797-2019 bp Feature: domain Description: GIIM Note: maturase Location: 1797-2019 bp Feature: gene Location: 2212-2358 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2224-2335 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2224-23 3 5 bp Feature: gene Location: 2385-2870 bp Feature: domain Description: COG3547 Location: 2403-2856 bp Feature: domain Description: COG3 547 Location: 2403 -2856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase )