myRT

myRT report for GCA_002967285.1_BS972

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Seq: PUGW01000144.1 Shigella flexneri strain BS972 CFSAN004211_289, whole genome shotgun sequence (4650 bp)
Overview 1 RT 1: 103-2959 bp Neighborhood of RT #1 [103, 3024] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1 1 08 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 83-1 381 bp Feature: gene Location: 1580-2005 bp Feature: gene Location: 2218-3024 bp Feature: domain Description: PHA02517 Location: 2278-2557 bp Feature: domain Description: PHA0251 7 Location: 2278-2557 bp Feature: domain Description: PHA02517 Location: 2605-2959 bp Feature: domain Description: PHA0251 7 Location: 2605-2959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PUGW01000011.1 Shigella flexneri strain BS972 CFSAN004211_31, whole genome shotgun sequence (6098 bp)
Overview 1 RT 1: 3-2813 bp Neighborhood of RT #1 [3, 2827] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-134 bp Feature: domain Description: PHA02517 Location: 6-132 bp Feature: domain Description: PHA02 517 Location: 6-132 bp Feature: gene Location: 228-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 40-333 bp Feature: gene Location: 836-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 2 -1676 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: gene Location: 2169-2315 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2181-2292 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 181-2 2 92 bp Feature: gene Location: 2342-2827 bp Feature: domain Description: COG3547 Location: 2360-2813 bp Feature: domain Description: COG3547 Location: 2 360-2 813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PUGW01000184.1 Shigella flexneri strain BS972 CFSAN004211_377, whole genome shotgun sequence (5902 bp)
Overview 1 RT 1: 590-3725 bp Neighborhood of RT #1 [590, 3725] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 590-1339 bp Feature: domain Description: PAP2_acid_phosphatase Location: 665-1319 bp Feature: domain Description: PAP2_acid_phosphatase Location: 665-13 19 bp Feature: gene Location: 1735-1935 bp Feature: domain Description: Tra5 Location: 1744-1918 bp Feature: domain Description: Tra5 Location: 1744-1918 bp Feature: gene Location: 1948-2751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248-2743 bp Feature: gene Location: 2804-3130 bp Feature: domain Description: GIIM Note: maturase Location: 2837-3056 bp Feature: domain Description: GIIM Note: maturase Location: 283 7-3 056 bp Feature: gene Location: 3483-3725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)