myRT

myRT report for GCA_002967295.1_BS970

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Seq: PUGY01000111.1 Shigella flexneri strain BS970 CFSAN004210_212, whole genome shotgun sequence (1982 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 1979] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-1979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUGY01000182.1 Shigella flexneri strain BS970 CFSAN004210_324, whole genome shotgun sequence (17256 bp)
Overview 1 RT 1: 3-2813 bp Neighborhood of RT #1 [3, 2827] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-134 bp Feature: domain Description: PHA02517 Location: 6-132 bp Feature: domain Description: PHA02 517 Location: 6-132 bp Feature: gene Location: 228-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 40-333 bp Feature: gene Location: 836-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 2 -1676 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: gene Location: 2169-2315 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2181-2292 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 181-2 2 92 bp Feature: gene Location: 2342-2827 bp Feature: domain Description: COG3547 Location: 2360-2813 bp Feature: domain Description: COG3547 Location: 2 360-2 813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PUGY01000324.1 Shigella flexneri strain BS970 CFSAN004210_674, whole genome shotgun sequence (13482 bp)
Overview 1 RT 1: 2592-5293 bp Neighborhood of RT #1 [2592, 5313] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2592-2747 bp Feature: gene Location: 2773-3144 bp Feature: domain Description: GIIM Note: maturase Location: 2851-3070 bp Feature: domain Description: GIIM Note: maturase Location: 2851-3 070 bp Feature: gene Location: 3152-3955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 452-3 947 bp Feature: gene Location: 3968-4168 bp Feature: domain Description: Tra5 Location: 3977-4151 bp Feature: domain Description: Tra5 Location: 3 977-4151 bp Feature: gene Location: 4564-5313 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4639-5293 bp Feature: domain Description: PAP2_acid_phosphatase Location: 463 9-5293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)