myRT

myRT report for GCA_002967315.1_BS968

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Seq: PUGZ01000532.1 Shigella flexneri strain BS968 CFSAN004071_1258, whole genome shotgun sequence (7085 bp)
Overview 1 RT 1: 3775-6476 bp Neighborhood of RT #1 [3775, 6496] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 3775-3930 bp Feature: gene Location: 3956-4282 bp Feature: domain Description: GIIM Note: maturase Location: 3989-4208 bp Feature: domain Description: GIIM Note: maturase Location: 3989-4208 bp Feature: gene Location: 4335-5138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-5130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-51 30 bp Feature: gene Location: 5151-5351 bp Feature: domain Description: Tra5 Location: 5160-5334 bp Feature: domain Description: Tra5 Location: 51 60-5334 bp Feature: gene Location: 5747-6496 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5822-6476 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5822-6476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: PUGZ01000269.1 Shigella flexneri strain BS968 CFSAN004071_476, whole genome shotgun sequence (14206 bp)
Overview 1 RT 1: 11532-13859 bp Neighborhood of RT #1 [11532, 14104] PHA02517 RVT-GII GIIM Feature: gene Location: 11532-11660 bp Feature: gene Location: 11708-11989 bp Feature: domain Description: PHA02517 Location: 11714-11924 bp Feature: domain Description: PHA02 517 Location: 11714-1192 4 bp Feature: gene Location: 12581-14104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12854-13586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 854-13586 bp Feature: domain Description: GIIM Note: maturase Location: 13661-13859 bp Feature: domain Description: GIIM Note: maturase Location: 13661-13859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PUGZ01000383.1 Shigella flexneri strain BS968 CFSAN004071_762, whole genome shotgun sequence (14408 bp)
Overview 1 RT 1: 3-2813 bp Neighborhood of RT #1 [3, 2827] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-134 bp Feature: domain Description: PHA02517 Location: 6-132 bp Feature: domain Description: PHA02517 Location: 6-13 2 bp Feature: gene Location: 228-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-3 3 3 bp Feature: gene Location: 836-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: gene Location: 2169-2315 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2181-2292 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2181-2292 bp Feature: gene Location: 2342-2827 bp Feature: domain Description: COG3547 Location: 2360-2813 bp Feature: domain Description: COG3 547 Location: 23 60-2813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)