myRT

myRT report for GCA_002967375.1_BS966

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Seq: PUHB01000437.1 Shigella flexneri strain BS966 CFSAN004208_1035, whole genome shotgun sequence (8183 bp)
Overview 1 RT 1: 6310-8170 bp Neighborhood of RT #1 [6310, 8181] PHA02517 RVT-GII Feature: gene Location: 6310-6438 bp Feature: gene Location: 6528-6767 bp Feature: domain Description: PHA02517 Location: 6531-6702 bp Feature: domain Description: PHA0251 7 Location: 6531 -6702 bp Feature: gene Location: 7723-8181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7819-8170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781 9-81 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: PUHB01000450.1 Shigella flexneri strain BS966 CFSAN004208_1110, whole genome shotgun sequence (553 bp)
Overview 1 RT 1: 1-541 bp Neighborhood of RT #1 [1, 552] RVT-GII Feature: gene Location: 1-552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190-541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190-541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUHB01000358.1 Shigella flexneri strain BS966 CFSAN004208_804, whole genome shotgun sequence (1164 bp)
Overview 1 RT 1: 1-817 bp Neighborhood of RT #1 [1, 1062] RVT-GII GIIM Feature: gene Location: 1-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-544 bp Feature: domain Description: GIIM Note: maturase Location: 619-817 bp Feature: domain Description: GIIM Note: maturase Location: 619-817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUHB01000413.1 Shigella flexneri strain BS966 CFSAN004208_955, whole genome shotgun sequence (17102 bp)
Overview 1 RT 1: 2-2811 bp Neighborhood of RT #1 [2, 2825] PHA02517 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-226 bp Feature: domain Description: PHA02517 Location: 5-95 bp Feature: domain Description: PHA02517 Location: 5-95 bp Feature: gene Location: 834-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1674 bp Feature: domain Description: GIIM Note: maturase Location: 1752-1974 bp Feature: domain Description: GIIM Note: maturase Location: 1752-1974 bp Feature: gene Location: 2167-2313 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2179-2290 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2179-2290 bp Feature: gene Location: 2340-2825 bp Feature: domain Description: COG3547 Location: 2358-2811 bp Feature: domain Description: COG354 7 Location: 2358-2811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: PUHB01000419.1 Shigella flexneri strain BS966 CFSAN004208_971, whole genome shotgun sequence (13722 bp)
Overview 1 RT 1: 2935-5636 bp Neighborhood of RT #1 [2935, 5656] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2935-3090 bp Feature: gene Location: 3116-3487 bp Feature: domain Description: GIIM Note: maturase Location: 3194-3413 bp Feature: domain Description: GIIM Note: maturase Location: 3194-3413 bp Feature: gene Location: 3495-4298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3795-4290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3795 -4290 bp Feature: gene Location: 4311-4511 bp Feature: domain Description: Tra5 Location: 4320-4494 bp Feature: domain Description: Tra5 Location: 4320-4494 bp Feature: gene Location: 4907-5656 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4982-5636 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4982-5 636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)