myRT

myRT report for GCA_002967405.1_BS956

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Seq: PUHD01000091.1 Shigella flexneri strain BS956 CFSAN004206_2569, whole genome shotgun sequence (4881 bp)
Overview 1 RT 1: 2659-4810 bp Neighborhood of RT #1 [2659, 4810] GIIM RVT-GII Tra5 Feature: gene Location: 2659-2814 bp Feature: gene Location: 2840-3211 bp Feature: domain Description: GIIM Note: maturase Location: 2918-3137 bp Feature: domain Description: GIIM Note: maturase Location: 291 8-31 37 bp Feature: gene Location: 3219-4022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3519-4014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 9-401 4 bp Feature: gene Location: 4035-4235 bp Feature: domain Description: Tra5 Location: 4044-4218 bp Feature: domain Description: Tra5 Location: 4044-421 8 bp Feature: gene Location: 4631-4810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: PUHD01000117.1 Shigella flexneri strain BS956 CFSAN004206_2595, whole genome shotgun sequence (5511 bp)
Overview 1 RT 1: 2861-5482 bp Neighborhood of RT #1 [2861, 5508] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 2861-3346 bp Feature: domain Description: COG3547 Location: 2879-3332 bp Feature: domain Description: COG3547 Location: 2 879-3332 bp Feature: gene Location: 3442-3609 bp Feature: gene Location: 3635-4852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821-4475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 1-4475 bp Feature: domain Description: GIIM Note: maturase Location: 4553-4775 bp Feature: domain Description: GIIM Note: maturase Location: 4553-4775 bp Feature: gene Location: 4863-5246 bp Feature: gene Location: 5329-5508 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5332-5482 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5332 -5482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: PUHD01000284.1 Shigella flexneri strain BS956 CFSAN004206_2763, whole genome shotgun sequence (7749 bp)
Overview 1 RT 1: 650-7684 bp Neighborhood of RT #1 [650, 7684] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 650-4768 bp Feature: domain Description: ESPR Location: 653-722 bp Feature: domain Description: ESPR Location: 653 -722 bp Feature: domain Description: Peptidase_S6 Location: 803-2975 bp Feature: domain Description: Peptidase_S6 Location: 803 -2975 bp Feature: domain Description: autotrans_barl Location: 3539-4766 bp Feature: domain Description: autotrans_barl Location: 3 53 9-4766 bp Feature: gene Location: 4933-5319 bp Feature: domain Description: PHA02517 Location: 4936-5317 bp Feature: domain Description: PHA02517 Location: 493 6-53 17 bp Feature: gene Location: 5496-7019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5769-6501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5769-6501 bp Feature: domain Description: GIIM Note: maturase Location: 6576-6774 bp Feature: domain Description: GIIM Note: maturase Location: 6576-6774 bp Feature: gene Location: 7313-7684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)