myRT

myRT report for GCA_002967435.1_BS952

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Seq: PUHE01000137.1 Shigella flexneri strain BS952 CFSAN004205_283, whole genome shotgun sequence (62587 bp)
Overview 1 RT 1: 15773-20928 bp Neighborhood of RT #1 [15773, 20933] RVT-Retrons Q P Feature: gene Location: 15773-16039 bp Feature: gene Location: 16076-16999 bp Feature: gene Location: 17162-18124 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17339-17882 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7339-1 7882 bp Feature: gene Location: 18142-19167 bp Feature: domain Description: Q Location: 18148-19165 bp Feature: domain Description: Q Location: 1 81 48-1 91 65 bp Feature: gene Location: 19167-20933 bp Feature: domain Description: P Location: 19194-20928 bp Feature: domain Description: P Location: 1 91 94-20928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), P (PHA02535)

Seq: PUHE01000245.1 Shigella flexneri strain BS952 CFSAN004205_502, whole genome shotgun sequence (13379 bp)
Overview 1 RT 1: 2592-5293 bp Neighborhood of RT #1 [2592, 5313] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2592-2747 bp Feature: gene Location: 2773-3144 bp Feature: domain Description: GIIM Note: maturase Location: 2851-3070 bp Feature: domain Description: GIIM Note: maturase Location: 2 851-3070 bp Feature: gene Location: 3152-3955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452 -3947 bp Feature: gene Location: 3968-4168 bp Feature: domain Description: Tra5 Location: 3977-4151 bp Feature: domain Description: Tra5 Location: 3977-4151 bp Feature: gene Location: 4564-5313 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4639-5293 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4639-52 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: PUHE01000284.1 Shigella flexneri strain BS952 CFSAN004205_607, whole genome shotgun sequence (17105 bp)
Overview 1 RT 1: 14279-16932 bp Neighborhood of RT #1 [14279, 16932] COG3547 RVT-GII GIIM Feature: gene Location: 14279-14764 bp Feature: domain Description: COG3547 Location: 14297-14750 bp Feature: domain Description: COG3 547 Location: 14297-14750 bp Feature: gene Location: 14860-15027 bp Feature: gene Location: 15053-16270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15239-15893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523 9-15893 bp Feature: domain Description: GIIM Note: maturase Location: 15971-16193 bp Feature: domain Description: GIIM Note: maturase Location: 15971-16193 bp Feature: gene Location: 16281-16664 bp Feature: gene Location: 16738-16932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), GIIM (pfam08388)

Seq: PUHE01000048.1 Shigella flexneri strain BS952 CFSAN004205_76, whole genome shotgun sequence (2051 bp)
Overview 1 RT 1: 2-2009 bp Neighborhood of RT #1 [2, 2050] PHA02517 RVT-GII GIIM Feature: gene Location: 2-139 bp Feature: domain Description: PHA02517 Location: 8-74 bp Feature: domain Description: PHA02517 Location: 8-74 bp Feature: gene Location: 731-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004 -1736 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)