myRT

myRT report for GCA_002967455.1_BS973

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Seq: PUGJ01000205.1 Shigella flexneri strain BS973 CFSAN004212_346, whole genome shotgun sequence (4160 bp)
Overview 1 RT 1: 2592-4142 bp Neighborhood of RT #1 [2592, 4159] GIIM RVT-GII Tra5 Feature: gene Location: 2592-2747 bp Feature: gene Location: 2773-3144 bp Feature: domain Description: GIIM Note: maturase Location: 2851-3070 bp Feature: domain Description: GIIM Note: maturase Location: 2851 -3070 bp Feature: gene Location: 3152-3955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3947 bp Feature: gene Location: 3968-4159 bp Feature: domain Description: Tra5 Location: 3977-4142 bp Feature: domain Description: Tra5 Location: 3977-41 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: PUGJ01000259.1 Shigella flexneri strain BS973 CFSAN004212_457, whole genome shotgun sequence (2356 bp)
Overview 1 RT 1: 103-2291 bp Neighborhood of RT #1 [103, 2291] RVT-GII GIIM Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: gene Location: 1920-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUGJ01000312.1 Shigella flexneri strain BS973 CFSAN004212_590, whole genome shotgun sequence (6098 bp)
Overview 1 RT 1: 3-2813 bp Neighborhood of RT #1 [3, 2827] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-134 bp Feature: domain Description: PHA02517 Location: 6-132 bp Feature: domain Description: PHA02517 Location: 6-13 2 bp Feature: gene Location: 228-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-3 3 3 bp Feature: gene Location: 836-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: gene Location: 2169-2315 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2181-2292 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2181-2292 bp Feature: gene Location: 2342-2827 bp Feature: domain Description: COG3547 Location: 2360-2813 bp Feature: domain Description: COG3 547 Location: 23 60-2813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)