myRT

myRT report for GCA_002967535.1_BS980

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Seq: PUGS01000767.1 Shigella flexneri strain BS980 CFSAN004202_1025, whole genome shotgun sequence (4988 bp)
Overview 1 RT 1: 3-4021 bp Neighborhood of RT #1 [3, 4041] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 3-134 bp Feature: domain Description: PHA02517 Location: 6-132 bp Feature: domain Description: PHA0251 7 Location: 6-1 32 bp Feature: gene Location: 228-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: gene Location: 836-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 022-1 676 bp Feature: domain Description: GIIM Note: maturase Location: 1754-1976 bp Feature: domain Description: GIIM Note: maturase Location: 1 754-1 976 bp Feature: gene Location: 2320-2805 bp Feature: domain Description: COG3547 Location: 2338-2791 bp Feature: domain Description: COG3547 Location: 2338-2791 bp Feature: gene Location: 3061-4041 bp Feature: domain Description: sopB_N Location: 3238-3433 bp Feature: domain Description: sopB_N Location: 3238-3433 bp Feature: domain Description: ParB Location: 3646-4021 bp Feature: domain Description: ParB Location: 3646-4021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PUGS01000071.1 Shigella flexneri strain BS980 CFSAN004202_126, whole genome shotgun sequence (2458 bp)
Overview 1 RT 1: 103-2392 bp Neighborhood of RT #1 [103, 2457] RVT-GII GIIM PHA02517 Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: gene Location: 2218-2457 bp Feature: domain Description: PHA02517 Location: 2221-2392 bp Feature: domain Description: PHA02 517 Location: 2 2 2 1-2 392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PUGS01000727.1 Shigella flexneri strain BS980 CFSAN004202_981, whole genome shotgun sequence (1682 bp)
Overview 1 RT 1: 1-1277 bp Neighborhood of RT #1 [1, 1294] GIIM RVT-GII Tra5 Feature: gene Location: 1-270 bp Feature: domain Description: GIIM Note: maturase Location: 79-271 bp Feature: domain Description: GIIM Note: maturase Location: 79-271 bp Feature: gene Location: 278-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578-1073 bp Feature: gene Location: 1094-1294 bp Feature: domain Description: Tra5 Location: 1103-1277 bp Feature: domain Description: Tra5 Location: 1103 -1277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), GIIM (pfam08388), RVT-GII