myRT

myRT report for GCA_002967545.1_BS971

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Seq: PUGX01000648.1 Shigella flexneri strain BS971 CFSAN004072_1220, whole genome shotgun sequence (3144 bp)
Overview 1 RT 1: 388-2378 bp Neighborhood of RT #1 [388, 2378] Tra5 RVT-GII GIIM Feature: gene Location: 388-588 bp Feature: domain Description: Tra5 Location: 397-571 bp Feature: domain Description: Tra5 Location: 397-571 bp Feature: gene Location: 601-1404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 -1 396 bp Feature: gene Location: 1457-1783 bp Feature: domain Description: GIIM Note: maturase Location: 1490-1709 bp Feature: domain Description: GIIM Note: maturase Location: 1 490-1 709 bp Feature: gene Location: 2136-2378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: PUGX01000161.1 Shigella flexneri strain BS971 CFSAN004072_224, whole genome shotgun sequence (2520 bp)
Overview 1 RT 1: 2-2009 bp Neighborhood of RT #1 [2, 2254] PHA02517 RVT-GII GIIM Feature: gene Location: 2-139 bp Feature: domain Description: PHA02517 Location: 8-74 bp Feature: domain Description: PHA02 517 Location: 8-74 bp Feature: gene Location: 731-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2 009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PUGX01000320.1 Shigella flexneri strain BS971 CFSAN004072_505, whole genome shotgun sequence (2382 bp)
Overview 1 RT 1: 3-2380 bp Neighborhood of RT #1 [3, 2380] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 3-134 bp Feature: domain Description: PHA02517 Location: 6-132 bp Feature: domain Description: PHA02517 Location: 6-13 2 bp Feature: gene Location: 228-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-333 bp Feature: domain Description: DDE_Tnp_IS66 Location: 240-3 3 3 bp Feature: gene Location: 982-2115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084-1738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084-173 8 bp Feature: domain Description: GIIM Note: maturase Location: 1816-2038 bp Feature: domain Description: GIIM Note: maturase Location: 1816-203 8 bp Feature: gene Location: 2141-2380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)