myRT

myRT report for GCA_002967575.1_BS951

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Seq: PUHF01000584.1 Shigella flexneri strain BS951 CFSAN004070_1174, whole genome shotgun sequence (1726 bp)
Overview 1 RT 1: 2-1314 bp Neighborhood of RT #1 [2, 1388] Tra5 RVT-GII GIIM Feature: gene Location: 2-193 bp Feature: domain Description: Tra5 Location: 11-176 bp Feature: domain Description: Tra5 Location: 1 1 -1 76 bp Feature: gene Location: 206-1009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1 001 bp Feature: gene Location: 1062-1388 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1 095-1 31 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: PUHF01000158.1 Shigella flexneri strain BS951 CFSAN004070_250, whole genome shotgun sequence (2356 bp)
Overview 1 RT 1: 103-2291 bp Neighborhood of RT #1 [103, 2291] RVT-GII GIIM Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: gene Location: 1920-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUHF01000449.1 Shigella flexneri strain BS951 CFSAN004070_867, whole genome shotgun sequence (2904 bp)
Overview 1 RT 1: 149-2734 bp Neighborhood of RT #1 [149, 2748] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 149-280 bp Feature: domain Description: DDE_Tnp_IS66 Location: 161-254 bp Feature: domain Description: DDE_Tnp_IS66 Location: 161-254 bp Feature: gene Location: 841-1974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943-1597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943 -1597 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1897 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1897 bp Feature: gene Location: 2090-2236 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2102-2213 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2102-2213 bp Feature: gene Location: 2263-2748 bp Feature: domain Description: COG3547 Location: 2281-2734 bp Feature: domain Description: COG3 547 Location: 2281-273 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)