myRT

myRT report for GCA_002967595.1_BS975

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Seq: PUGV01000291.1 Shigella dysenteriae strain BS975 CFSAN003699_1030, whole genome shotgun sequence (3397 bp)
Overview 1 RT 1: 573-3227 bp Neighborhood of RT #1 [573, 3227] COG3547 RVT-GII GIIM Feature: gene Location: 573-1058 bp Feature: domain Description: COG3547 Location: 591-1044 bp Feature: domain Description: COG3547 Location: 591 -1 044 bp Feature: gene Location: 1154-1321 bp Feature: gene Location: 1347-2564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1533-2187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 533-21 87 bp Feature: domain Description: GIIM Note: maturase Location: 2265-2487 bp Feature: domain Description: GIIM Note: maturase Location: 2265-2487 bp Feature: gene Location: 2575-2994 bp Feature: gene Location: 3033-3227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: PUGV01000443.1 Shigella dysenteriae strain BS975 CFSAN003699_1491, whole genome shotgun sequence (22191 bp)
Overview 1 RT 1: 11817-20132 bp Neighborhood of RT #1 [11817, 20224] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 11817-13403 bp Feature: domain Description: prfC Location: 11835-13401 bp Feature: domain Description: prfC Location: 11835-13401 bp Feature: gene Location: 13623-13883 bp Feature: domain Description: PRK10597 Location: 13626-13866 bp Feature: domain Description: PRK10597 Location: 1362 6-13866 bp Feature: gene Location: 14243-15847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14534-15125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14534-1512 5 bp Feature: domain Description: TIR_2 Location: 15452-15740 bp Feature: domain Description: TIR_2 Location: 15452 -15740 bp Feature: gene Location: 16293-16877 bp Feature: domain Description: Caudo_TAP Location: 16509-16866 bp Feature: domain Description: Caudo_TAP Location: 16509-16866 bp Feature: gene Location: 16877-20224 bp Feature: domain Description: phage_tail_N Location: 16880-17279 bp Feature: domain Description: phage_tail_N Location: 16880-172 79 bp Feature: domain Description: 34 Location: 18977-19310 bp Feature: domain Description: 34 Location: 18977-19310 bp Feature: domain Description: Collar Location: 19595-19733 bp Feature: domain Description: Collar Location: 19595-19733 bp Feature: domain Description: Phage_fiber Location: 19784-19823 bp Feature: domain Description: Phage_fiber Location: 19784-1982 3 bp Feature: domain Description: Phage_fiber Location: 19880-19919 bp Feature: domain Description: Phage_fiber Location: 19880-19919 bp Feature: domain Description: Phage_fiber Location: 20027-20066 bp Feature: domain Description: Phage_fiber Location: 2 002 7-2 0066 bp Feature: domain Description: Phage_fiber Location: 20099-20132 bp Feature: domain Description: Phage_fiber Location: 2 0099-2 0132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: PUGV01000514.1 Shigella dysenteriae strain BS975 CFSAN003699_1631, whole genome shotgun sequence (1307 bp)
Overview 1 RT 1: 3-1133 bp Neighborhood of RT #1 [3, 1162] DDE_Tnp_IS1 Tra5 RVT-GII Feature: gene Location: 3-155 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6-153 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6-153 bp Feature: gene Location: 281-502 bp Feature: domain Description: Tra5 Location: 293-485 bp Feature: domain Description: Tra5 Location: 293 -485 bp Feature: gene Location: 515-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-113 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), DDE_Tnp_IS1 (pfam03400), RVT-GII