myRT

myRT report for GCA_002967615.1_BS937

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Seq: PUHI01000115.1 Shigella flexneri strain BS937 CFSAN002076_154, whole genome shotgun sequence (4028 bp)
Overview 1 RT 1: 2-1917 bp Neighborhood of RT #1 [2, 1917] Tra5 RVT-GII GIIM Feature: gene Location: 2-127 bp Feature: domain Description: Tra5 Location: 5-110 bp Feature: domain Description: Tra5 Location: 5-1 1 0 bp Feature: gene Location: 140-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-935 bp Feature: gene Location: 996-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1029-1248 bp Feature: domain Description: GIIM Note: maturase Location: 1 029-1 248 bp Feature: gene Location: 1675-1917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801), GIIM (pfam08388)

Seq: PUHI01000245.1 Shigella flexneri strain BS937 CFSAN002076_325, whole genome shotgun sequence (2356 bp)
Overview 1 RT 1: 2-2009 bp Neighborhood of RT #1 [2, 2254] PHA02517 RVT-GII GIIM Feature: gene Location: 2-139 bp Feature: domain Description: PHA02517 Location: 8-74 bp Feature: domain Description: PHA02 517 Location: 8-74 bp Feature: gene Location: 731-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2 009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PUHI01000548.1 Shigella flexneri strain BS937 CFSAN002076_769, whole genome shotgun sequence (5793 bp)
Overview 1 RT 1: 597-2574 bp Neighborhood of RT #1 [597, 2588] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 597-1814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783 -143 7 bp Feature: domain Description: GIIM Note: maturase Location: 1515-1737 bp Feature: domain Description: GIIM Note: maturase Location: 1515-173 7 bp Feature: gene Location: 1930-2076 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1942-2053 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1942-2053 bp Feature: gene Location: 2103-2588 bp Feature: domain Description: COG3547 Location: 2121-2574 bp Feature: domain Description: COG3 547 Location: 2121-2574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)