myRT

myRT report for GCA_002967655.1_SH199

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Seq: PUHK01000140.1 Shigella flexneri strain SH199 SH199_140_length_9564_cov_168.969_ID_48267, whole genome shotgun sequence (9564 bp)
Overview 1 RT 1: 6978-9444 bp Neighborhood of RT #1 [6978, 9518] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 6978-7727 bp Feature: domain Description: PAP2_acid_phosphatase Location: 7053-7707 bp Feature: domain Description: PAP2_acid_phosphatase Location: 7053-7707 bp Feature: gene Location: 8123-8323 bp Feature: domain Description: Tra5 Location: 8132-8306 bp Feature: domain Description: Tra5 Location: 81 32-8306 bp Feature: gene Location: 8336-9139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8636-9131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8636-91 31 bp Feature: gene Location: 9192-9518 bp Feature: domain Description: GIIM Note: maturase Location: 9225-9444 bp Feature: domain Description: GIIM Note: maturase Location: 9225-9444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: PUHK01000233.1 Shigella flexneri strain SH199 SH199_233_length_2354_cov_425.875_ID_48453, whole genome shotgun sequence (2354 bp)
Overview 1 RT 1: 3-2231 bp Neighborhood of RT #1 [3, 2308] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 3-389 bp Feature: domain Description: PHA02517 Location: 6-387 bp Feature: domain Description: PHA02 517 Location: 6-387 bp Feature: gene Location: 483-614 bp Feature: domain Description: DDE_Tnp_IS66 Location: 495-588 bp Feature: domain Description: DDE_Tnp_IS66 Location: 495-588 bp Feature: gene Location: 1175-2308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 77-1931 bp Feature: domain Description: GIIM Note: maturase Location: 2009-2231 bp Feature: domain Description: GIIM Note: maturase Location: 2 009-2 2 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050)

Seq: PUHK01000237.1 Shigella flexneri strain SH199 SH199_237_length_2272_cov_736.821_ID_48461, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)