myRT

myRT report for GCA_002967835.1_ASM296783v1

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Seq: PUIG01000018.1 Klebsiella pneumoniae strain BP737 NODE_18_length_132322_cov_101.199_ID_35, whole genome shotgun sequence (132322 bp)
Overview 1 RT 1: 35083-42184 bp Neighborhood of RT #1 [35083, 42184] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 35083-35559 bp Feature: domain Description: HTH_23 Location: 35161-35302 bp Feature: domain Description: HTH_23 Location: 351 61 -35302 bp Feature: gene Location: 35980-36849 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 36502-36673 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 36502-36673 bp Feature: gene Location: 37505-38605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37685-38219 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37685-3821 9 bp Feature: gene Location: 38720-40996 bp Feature: domain Description: AAA_15 Location: 38753-39761 bp Feature: domain Description: AAA_1 5 Location: 38753-39761 bp Feature: gene Location: 41879-42184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: PUIG01000005.1 Klebsiella pneumoniae strain BP737 NODE_5_length_272518_cov_114.116_ID_9, whole genome shotgun sequence (272518 bp)
Overview 1 RT 1: 728-7581 bp Neighborhood of RT #1 [728, 7598] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 728-1393 bp Feature: domain Description: INT_P4_C Location: 833-1391 bp Feature: domain Description: INT_P4_C Location: 833-1391 bp Feature: gene Location: 1654-2094 bp Feature: domain Description: Integrase_1 Location: 1660-1876 bp Feature: domain Description: Integrase_1 Location: 1660-1876 bp Feature: gene Location: 2151-4229 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2559-3003 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 559-3003 bp Feature: gene Location: 4229-6838 bp Feature: domain Description: FimD Location: 4286-6827 bp Feature: domain Description: FimD Location: 42 86-682 7 bp Feature: gene Location: 6870-7598 bp Feature: domain Description: FimC Location: 6918-7581 bp Feature: domain Description: FimC Location: 6918-7581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: PUIG01000065.1 Klebsiella pneumoniae strain BP737 NODE_65_length_1915_cov_288.936_ID_129, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 60-1913 bp Neighborhood of RT #1 [60, 1913] RVT-GII Feature: gene Location: 60-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: gene Location: 1701-1913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII