myRT

myRT report for GCA_002968035.1_ASM296803v1

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Seq: PUIO01000030.1 Rhodococcus opacus strain 04-OD7 Scaffold29_1, whole genome shotgun sequence (111965 bp)
Overview 1 RT 1: 98520-102939 bp Neighborhood of RT #1 [98520, 103016] GlnQ TIGR00004 RVT-Retrons SDR_c NfsA_FRP Feature: gene Location: 98520-99284 bp Feature: domain Description: GlnQ Location: 98535-99279 bp Feature: domain Description: GlnQ Location: 98535-99279 bp Feature: gene Location: 99341-99724 bp Feature: domain Description: TIGR00004 Location: 99353-99710 bp Feature: domain Description: TIGR00004 Location: 99353-9971 0 bp Feature: gene Location: 99935-101248 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100412-101006 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0041 2-1 01 006 bp Feature: gene Location: 101261-102007 bp Feature: domain Description: SDR_c Location: 101285-101948 bp Feature: domain Description: SDR_c Location: 1 01 285-1 01 948 bp Feature: gene Location: 102141-103016 bp Feature: domain Description: NfsA_FRP Location: 102279-102939 bp Feature: domain Description: NfsA_FRP Location: 1 02279-1 02939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SDR_c (cd05233), NfsA_FRP, GlnQ (COG1126), TIGR00004 (reactive intermediate/imine deaminase), RVT-Retrons

Seq: PUIO01000043.1 Rhodococcus opacus strain 04-OD7 Scaffold42_1, whole genome shotgun sequence (91503 bp)
Overview 1 RT 1: 36000-40238 bp Neighborhood of RT #1 [36000, 40291] DUF4267 Tra8 RVT-GII INT_RitC_C_like PBP1_ABC_sugar_binding_like_4 Feature: gene Location: 36000-36269 bp Feature: domain Description: DUF4267 Location: 36039-36240 bp Feature: domain Description: DUF42 67 Location: 36039-362 40 bp Feature: gene Location: 36308-36976 bp Feature: domain Description: Tra8 Location: 36518-36914 bp Feature: domain Description: Tra8 Location: 36518-36914 bp Feature: gene Location: 37517-38332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37841-38231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37841-382 31 bp Feature: gene Location: 38343-39065 bp Feature: domain Description: INT_RitC_C_like Location: 38436-38985 bp Feature: domain Description: INT_RitC_C_like Location: 38436-38985 bp Feature: gene Location: 39263-40291 bp Feature: domain Description: PBP1_ABC_sugar_binding_like_4 Location: 39443-40238 bp Feature: domain Description: PBP1_ABC_sugar_binding_like_4 Location: 39443-402 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4267 (pfam14087), Tra8 (COG2826), RVT-GII, INT_RitC_C_like (cd01182), PBP1_ABC_sugar_binding_like_4

Seq: PUIO01000100.1 Rhodococcus opacus strain 04-OD7 Scaffold97_1, whole genome shotgun sequence (20229 bp)
Overview 1 RT 1: 7003-10438 bp Neighborhood of RT #1 [7003, 10479] RVT-GII SDR_c PRK06210 Feature: gene Location: 7003-7203 bp Feature: gene Location: 7438-7902 bp Feature: gene Location: 7957-8463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8110-8263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8110-8263 bp Feature: gene Location: 8849-9667 bp Feature: domain Description: SDR_c Location: 8873-9548 bp Feature: domain Description: SDR_c Location: 8873 -9548 bp Feature: gene Location: 9664-10479 bp Feature: domain Description: PRK06210 Location: 9685-10438 bp Feature: domain Description: PRK06210 Location: 9685-1043 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SDR_c (cd05233), PRK06210 (enoyl-CoA hydratase; Provisional)