myRT

myRT report for GCA_002968135.1_ASM296813v1

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Seq: PSSP01000003.1 Shigella boydii strain ATCC 12034 plasmid unnamed contig3_ATCC-12034, whole genome shotgun sequence (251107 bp)
Overview 1 RT 1: 27975-33410 bp 2 RT 2: 155885-159212 bp Neighborhood of RT #1 [27975, 33412] PAP2_acid_phosphatase Tra5 RVT-GII RVT-GII GIIM ushA Neighborhood of RT #2 [155885, 159226] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 27975-28724 bp Feature: domain Description: PAP2_acid_phosphatase Location: 28050-28704 bp Feature: domain Description: PAP2_acid_phosphatase Location: 28050-28704 bp Feature: gene Location: 29099-29320 bp Feature: domain Description: Tra5 Location: 29111-29303 bp Feature: domain Description: Tra5 Location: 291 1 1 -29303 bp Feature: gene Location: 29333-30460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29633-30290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29633-30290 bp Feature: gene Location: 30759-31286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30765-30909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30765-30909 bp Feature: domain Description: GIIM Note: maturase Location: 30993-31209 bp Feature: domain Description: GIIM Note: maturase Location: 30993-31 209 bp Feature: gene Location: 31639-31881 bp Feature: gene Location: 31793-33412 bp Feature: domain Description: ushA Location: 31808-33410 bp Feature: domain Description: ushA Location: 31 808-3341 0 bp Feature: gene Location: 155885-156532 bp Feature: domain Description: PHA02517 Location: 155888-156530 bp Feature: domain Description: PHA0251 7 Location: 1 55888-1 56530 bp Feature: gene Location: 156626-156757 bp Feature: domain Description: DDE_Tnp_IS66 Location: 156638-156731 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 56638-1 56731 bp Feature: gene Location: 157235-158452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157421-158075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57421 -1 58075 bp Feature: domain Description: GIIM Note: maturase Location: 158153-158375 bp Feature: domain Description: GIIM Note: maturase Location: 1 581 53-1 58375 bp Feature: gene Location: 158568-158714 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 158580-158691 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 58580-1 58691 bp Feature: gene Location: 158741-159226 bp Feature: domain Description: COG3547 Location: 158759-159212 bp Feature: domain Description: COG3547 Location: 1 58759-1 5921 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )