myRT

myRT report for GCA_002968215.1_ASM296821v1

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Seq: PSSQ01000004.1 Shigella dysenteriae strain ATCC 12038 plasmid unnamed contig4_ATCC-12038, whole genome shotgun sequence (165104 bp)
Overview 1 RT 1: 32722-36091 bp 2 RT 2: 161383-164910 bp Neighborhood of RT #1 [32722, 36105] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [161383, 164924] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 32722-33423 bp Feature: domain Description: PHA02517 Location: 32728-33409 bp Feature: domain Description: PHA0251 7 Location: 32728-33409 bp Feature: gene Location: 33505-33636 bp Feature: domain Description: DDE_Tnp_IS66 Location: 33517-33610 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3351 7-3361 0 bp Feature: gene Location: 34198-35331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34300-34954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34300-34954 bp Feature: domain Description: GIIM Note: maturase Location: 35032-35254 bp Feature: domain Description: GIIM Note: maturase Location: 35032-35254 bp Feature: gene Location: 35447-35593 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 35459-35570 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 35459-35570 bp Feature: gene Location: 35620-36105 bp Feature: domain Description: COG3547 Location: 35638-36091 bp Feature: domain Description: COG3547 Location: 35638-36091 bp Feature: gene Location: 161383-162375 bp Feature: domain Description: PHA02517 Location: 161536-162361 bp Feature: domain Description: PHA0251 7 Location: 1 61 536-1 62361 bp Feature: gene Location: 162457-162588 bp Feature: domain Description: DDE_Tnp_IS66 Location: 162469-162562 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 62469-1 62562 bp Feature: gene Location: 163197-164276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163275-163896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63275-1 63896 bp Feature: domain Description: GIIM Note: maturase Location: 163974-164196 bp Feature: domain Description: GIIM Note: maturase Location: 1 63974-1 641 96 bp Feature: gene Location: 164392-164538 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 164404-164515 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 64404-1 6451 5 bp Feature: gene Location: 164565-164924 bp Feature: domain Description: COG3547 Location: 164580-164910 bp Feature: domain Description: COG3547 Location: 1 64580-1 6491 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: PSSQ01000001.1 Shigella dysenteriae strain ATCC 12038 contig1_ATCC-12038, whole genome shotgun sequence (4292356 bp)
Overview 1 RT 1: 4100682-4103959 bp Neighborhood of RT #1 [4100682, 4103961] DDE_Tnp_IS66 RVT-GII GIIM PRK09409 PRK09413 Feature: gene Location: 4100682-4101101 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4100736-4101060 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4100736-4101060 bp Feature: gene Location: 4101309-4101470 bp Feature: gene Location: 4101563-4102699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4101764-4102418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4101764-4102 418 bp Feature: domain Description: GIIM Note: maturase Location: 4102496-4102649 bp Feature: domain Description: GIIM Note: maturase Location: 4102 496-4102 649 bp Feature: gene Location: 4102733-4103638 bp Feature: domain Description: PRK09409 Location: 4102736-4103636 bp Feature: domain Description: PRK09409 Location: 4102 736-4103636 bp Feature: gene Location: 4103596-4103961 bp Feature: domain Description: PRK09413 Location: 4103599-4103959 bp Feature: domain Description: PRK09413 Location: 4103599-4103959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), PRK09409 (IS2 transposase TnpB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed)