myRT

myRT report for GCA_002968235.1_ASM296823v1

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Seq: PSST01000001.1 Shigella dysenteriae strain ATCC 49550 plasmid unnamed contig1_ATCC-49550, whole genome shotgun sequence (230788 bp)
Overview 1 RT 1: 50062-53389 bp 2 RT 2: 146789-148779 bp Neighborhood of RT #1 [50062, 53403] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [146789, 148779] PRK09413 Tra5 RVT-GII InsE Feature: gene Location: 50062-50721 bp Feature: domain Description: PHA02517 Location: 50065-50707 bp Feature: domain Description: PHA0251 7 Location: 50065-50707 bp Feature: gene Location: 50803-50934 bp Feature: domain Description: DDE_Tnp_IS66 Location: 50815-50908 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5081 5-50908 bp Feature: gene Location: 51412-52629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51598-52252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 598-52252 bp Feature: domain Description: GIIM Note: maturase Location: 52330-52552 bp Feature: domain Description: GIIM Note: maturase Location: 52330-52552 bp Feature: gene Location: 52745-52891 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52757-52868 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52757-52868 bp Feature: gene Location: 52918-53403 bp Feature: domain Description: COG3547 Location: 52936-53389 bp Feature: domain Description: COG3547 Location: 52936-53389 bp Feature: gene Location: 146789-147154 bp Feature: domain Description: PRK09413 Location: 146792-147152 bp Feature: domain Description: PRK0941 3 Location: 1 46792-1 471 52 bp Feature: gene Location: 147396-147617 bp Feature: domain Description: Tra5 Location: 147408-147600 bp Feature: domain Description: Tra5 Location: 1 47408-1 47600 bp Feature: gene Location: 147630-148277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147930-148248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47930-1 48248 bp Feature: gene Location: 148303-148629 bp Feature: domain Description: InsE Location: 148306-148627 bp Feature: domain Description: InsE Location: 1 48306-1 48627 bp Feature: gene Location: 148651-148779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PRK09413 (IS2 repressor TnpA; Reviewed), Tra5 (COG2801), InsE (COG2963)