myRT

myRT report for GCA_002968975.1_ASM296897v1

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Seq: PUWU01000123.1 Photorhabdus luminescens strain H3 NODE_123_LENGTH_2562_COV_49.1807, whole genome shotgun sequence (2562 bp)
Overview 1 RT 1: 583-2428 bp Neighborhood of RT #1 [583, 2487] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 583-2487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871 -1 708 bp Feature: domain Description: Intron_maturas2 Location: 1843-2098 bp Feature: domain Description: Intron_maturas2 Location: 1 843-2098 bp Feature: domain Description: HNHc Note: nucleases Location: 2269-2428 bp Feature: domain Description: HNHc Note: nucleases Location: 2269-2428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PUWU01000176.1 Photorhabdus luminescens strain H3 NODE_176_LENGTH_820_COV_97.2569, whole genome shotgun sequence (820 bp)
Overview 1 RT 1: 80-725 bp Neighborhood of RT #1 [80, 817] RVT-GII GIIM Feature: gene Location: 80-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-42 8 bp Feature: domain Description: GIIM Note: maturase Location: 512-725 bp Feature: domain Description: GIIM Note: maturase Location: 512 -72 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUWU01000180.1 Photorhabdus luminescens strain H3 NODE_180_LENGTH_756_COV_68.9936, whole genome shotgun sequence (756 bp)
Overview 1 RT 1: 51-756 bp Neighborhood of RT #1 [51, 755] RVT-GII Feature: gene Location: 51-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 27-756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUWU01000040.1 Photorhabdus luminescens strain H3 NODE_40_LENGTH_46719_COV_19.1686, whole genome shotgun sequence (46719 bp)
Overview 1 RT 1: 20237-26566 bp Neighborhood of RT #1 [20237, 26566] HD_6 DEXHc_cas3 RVT-Retrons DppF Feature: gene Location: 20237-21316 bp Feature: domain Description: HD_6 Location: 20267-20942 bp Feature: domain Description: HD_6 Location: 20267-2094 2 bp Feature: domain Description: DEXHc_cas3 Location: 21137-21302 bp Feature: domain Description: DEXHc_cas3 Location: 21137-21302 bp Feature: gene Location: 21799-21930 bp Feature: gene Location: 22808-23794 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22955-23525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22955-23525 bp Feature: gene Location: 23798-25138 bp Feature: domain Description: DppF Location: 23846-24584 bp Feature: domain Description: DppF Location: 2384 6-24 584 bp Feature: gene Location: 25535-26566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HD_6 (pfam18019), DEXHc_cas3 (cd17930), RVT-Retrons, DppF (COG1124)

Seq: PUWU01000062.1 Photorhabdus luminescens strain H3 NODE_62_LENGTH_30919_COV_22.6514, whole genome shotgun sequence (30919 bp)
Overview 1 RT 1: 17030-19834 bp Neighborhood of RT #1 [17030, 19938] RVT-UG2 PRK09692 Feature: gene Location: 17030-17191 bp Feature: gene Location: 17434-17568 bp Feature: gene Location: 17657-18982 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 17906-18689 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 17906-18689 bp Feature: gene Location: 19031-19222 bp Feature: gene Location: 19621-19938 bp Feature: domain Description: PRK09692 Location: 19636-19834 bp Feature: domain Description: PRK09692 Location: 19636-19834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK09692 (Integrase; provisional)