myRT

myRT report for GCA_002969055.1_ASM296905v1

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Seq: PUWW01000029.1 Photorhabdus luminescens strain H5 NODE_29_LENGTH_45143_COV_10.7085, whole genome shotgun sequence (45143 bp)
Overview 1 RT 1: 7368-10368 bp 2 RT 2: 37370-40477 bp Neighborhood of RT #1 [7368, 10508] RVT-GII GIIM rve Neighborhood of RT #2 [37370, 40477] SAM_DCase_Bsu RVT-GII Feature: gene Location: 7368-7526 bp Feature: gene Location: 7532-7684 bp Feature: gene Location: 8393-9073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8597-9056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8597-9056 bp Feature: gene Location: 9225-9641 bp Feature: domain Description: GIIM Note: maturase Location: 9336-9552 bp Feature: domain Description: GIIM Note: maturase Location: 9336-9552 bp Feature: gene Location: 9798-10508 bp Feature: domain Description: rve Location: 9999-10368 bp Feature: domain Description: rve Location: 9999-1 0368 bp Feature: gene Location: 37370-37756 bp Feature: domain Description: SAM_DCase_Bsu Location: 37385-37709 bp Feature: domain Description: SAM_DCase_Bsu Location: 37385-37709 bp Feature: gene Location: 38358-38522 bp Feature: gene Location: 38615-39091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38951-39068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38951 -39068 bp Feature: gene Location: 39321-39719 bp Feature: gene Location: 40004-40477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rve (pfam00665), SAM_DCase_Bsu (TIGR03330)

Seq: PUWW01000082.1 Photorhabdus luminescens strain H5 NODE_82_LENGTH_18292_COV_11.0978, whole genome shotgun sequence (18292 bp)
Overview 1 RT 1: 11513-14063 bp Neighborhood of RT #1 [11513, 14122] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 11513-11896 bp Feature: gene Location: 11906-12094 bp Feature: gene Location: 12407-13624 bp Feature: domain Description: RVT_N Location: 12461-12704 bp Feature: domain Description: RVT_N Location: 12 461-12 704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12749-13400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 749-13400 bp Feature: domain Description: GIIM Note: maturase Location: 13451-13622 bp Feature: domain Description: GIIM Note: maturase Location: 13451-1362 2 bp Feature: gene Location: 13668-13829 bp Feature: gene Location: 13877-14122 bp Feature: domain Description: HNHc Note: nucleases Location: 13919-14063 bp Feature: domain Description: HNHc Note: nucleases Location: 13919-14063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PUWW01000008.1 Photorhabdus luminescens strain H5 NODE_8_LENGTH_102779_COV_16.5079, whole genome shotgun sequence (102779 bp)
Overview 1 RT 1: 89125-92462 bp Neighborhood of RT #1 [89125, 92462] RVT-Retrons DppF Feature: gene Location: 89125-89256 bp Feature: gene Location: 89729-89857 bp Feature: gene Location: 90133-91119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90283-90850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90283 -90850 bp Feature: gene Location: 91123-92280 bp Feature: domain Description: DppF Location: 91171-91909 bp Feature: domain Description: DppF Location: 91171-91909 bp Feature: gene Location: 92328-92462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DppF (COG1124)