myRT

myRT report for GCA_002969095.1_ASM296909v1

Download annotations/find similar RTs

Seq: PUXB01000116.1 Klebsiella pneumoniae strain B35725 NODE_116_length_1976_cov_249.86_ID_231, whole genome shotgun sequence (1976 bp)
Overview 1 RT 1: 72-1611 bp Neighborhood of RT #1 [72, 1611] RVT-GII GIIM Feature: gene Location: 72-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-990 bp Feature: domain Description: GIIM Note: maturase Location: 1029-1248 bp Feature: domain Description: GIIM Note: maturase Location: 1 029-1 248 bp Feature: gene Location: 1480-1611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUXB01000003.1 Klebsiella pneumoniae strain B35725 NODE_3_length_250579_cov_17.9518_ID_5, whole genome shotgun sequence (250579 bp)
Overview 1 RT 1: 112270-117571 bp Neighborhood of RT #1 [112270, 117576] PRK15110 PRK09951 RVT-UG11 umuC PRK10276 Feature: gene Location: 112270-113235 bp Feature: domain Description: PRK15110 Location: 112273-113233 bp Feature: domain Description: PRK15110 Location: 112 2 73-1132 33 bp Feature: gene Location: 113440-114108 bp Feature: domain Description: PRK09951 Location: 113443-114106 bp Feature: domain Description: PRK09951 Location: 113443-114106 bp Feature: gene Location: 114309-115217 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 114582-115038 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 114582 -115038 bp Feature: gene Location: 115890-117155 bp Feature: domain Description: umuC Location: 115893-117153 bp Feature: domain Description: umuC Location: 115893-117153 bp Feature: gene Location: 117157-117576 bp Feature: domain Description: PRK10276 Location: 117160-117571 bp Feature: domain Description: PRK102 76 Location: 117160-117571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: PUXB01000068.1 Klebsiella pneumoniae strain B35725 NODE_68_length_19587_cov_63.3725_ID_135, whole genome shotgun sequence (19587 bp)
Overview 1 RT 1: 3177-7376 bp Neighborhood of RT #1 [3177, 7378] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 3177-3323 bp Feature: gene Location: 3466-3741 bp Feature: gene Location: 4315-5982 bp Feature: domain Description: RVT_N Location: 4363-4600 bp Feature: domain Description: RVT_N Location: 43 63 -4600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651-5293 bp Feature: domain Description: GIIM Note: maturase Location: 5344-5578 bp Feature: domain Description: GIIM Note: maturase Location: 53 44-5578 bp Feature: domain Description: HNHc Note: nucleases Location: 5788-5947 bp Feature: domain Description: HNHc Note: nucleases Location: 5788-5947 bp Feature: gene Location: 6484-6906 bp Feature: domain Description: DUF1380 Location: 6487-6784 bp Feature: domain Description: DUF13 80 Location: 6487-6784 bp Feature: gene Location: 6953-7378 bp Feature: domain Description: Antirestrict Location: 7088-7376 bp Feature: domain Description: Antirestrict Location: 7088-73 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)

Seq: PUXB01000086.1 Klebsiella pneumoniae strain B35725 NODE_86_length_6623_cov_49.1945_ID_171, whole genome shotgun sequence (6623 bp)
Overview 1 RT 1: 2-2678 bp Neighborhood of RT #1 [2, 2680] RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 2-190 bp Feature: gene Location: 344-1831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 9-14 39 bp Feature: gene Location: 1983-2258 bp Feature: domain Description: InsA Location: 1986-2250 bp Feature: domain Description: InsA Location: 1986-2250 bp Feature: gene Location: 2177-2680 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2288-2678 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2288-2678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)