myRT

myRT report for GCA_002969175.1_ASM296917v1

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Seq: CP014331.1 Clostridium sp. MF28, genome (6148198 bp)
Overview 1 RT 1: 317733-326025 bp 2 RT 2: 836163-841514 bp 3 RT 3: 1036013-1041757 bp 4 RT 4: 1470611-1479947 bp 5 RT 5: 1662603-1667224 bp 6 RT 6: 2172585-2179883 bp 7 RT 7: 2244304-2250510 bp 8 RT 8: 3739936-3744772 bp 9 RT 9: 5126678-5132079 bp 10 RT 10: 5782960-5790873 bp 11 RT 11: 5798374-5804139 bp Neighborhood of RT #1 [317733, 326588] FA_desaturase RVT-GII HTH_3 COG4584 COG4584 PRK09183 RVT-GII YqiK Neighborhood of RT #2 [836163, 841519] Sig70_famx3 RVT-GII Peptidase_M56 COG3682 Neighborhood of RT #3 [1036013, 1042245] MviM RVT-UNC RVT-GII PRK09183 HTH_3 COG4584 COG4584 Neighborhood of RT #4 [1470611, 1480018] CcmA OmpR RVT-GII RVT-GII CitA Tar YicI Neighborhood of RT #5 [1662603, 1667307] RVT-GII Tar Acetyltransf_1 Neighborhood of RT #6 [2172585, 2179885] MrcB PepSY RVT-GII ndk PRK14420 Neighborhood of RT #7 [2244304, 2250530] Phage_rep_org_N Smc RVT-GII PRK08119 FliM Neighborhood of RT #8 [3739936, 3744772] NT_KNTase_like RVT-GII GIIM T_den_put_tspse T_den_put_tspse Neighborhood of RT #9 [5126678, 5132090] COG4185 COG4185 RVT-UG2 IscU GGGtGRT Neighborhood of RT #10 [5782960, 5790890] MdlB MdlB RVT-GII AcpP FACL_like_6 Neighborhood of RT #11 [5798374, 5804144] ACH1 AHL_lactonase_MBL-fold RVT-GII Acetyltransf_1 PRK08123 Feature: gene Location: 317733-318029 bp Feature: gene Location: 318061-318768 bp Feature: domain Description: FA_desaturase Location: 318067-318616 bp Feature: domain Description: FA_desaturase Location: 31 8067-31 861 6 bp Feature: gene Location: 319973-320326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320012-320291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32001 2-320291 bp Feature: gene Location: 320388-321683 bp Feature: domain Description: HTH_3 Location: 320484-320583 bp Feature: domain Description: HTH_3 Location: 320484-320583 bp Feature: domain Description: COG4584 Location: 320592-320763 bp Feature: domain Description: COG4584 Location: 320592-320763 bp Feature: domain Description: COG4584 Location: 320805-321195 bp Feature: domain Description: COG4584 Location: 320805-321 1 95 bp Feature: gene Location: 321676-322428 bp Feature: domain Description: PRK09183 Location: 321679-322414 bp Feature: domain Description: PRK091 83 Location: 321 679-32241 4 bp Feature: gene Location: 322449-323084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322704-323064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322704-323064 bp Feature: gene Location: 323652-323870 bp Feature: gene Location: 324333-326588 bp Feature: domain Description: YqiK Location: 324351-326025 bp Feature: domain Description: YqiK Location: 324351 -326025 bp Feature: gene Location: 836163-836696 bp Feature: domain Description: Sig70_famx3 Location: 836202-836679 bp Feature: domain Description: Sig70_famx3 Location: 836202-836679 bp Feature: gene Location: 836726-836875 bp Feature: gene Location: 837758-838672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838013-838637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83801 3-838637 bp Feature: gene Location: 839294-840937 bp Feature: domain Description: Peptidase_M56 Location: 839429-840077 bp Feature: domain Description: Peptidase_M56 Location: 839429-840077 bp Feature: gene Location: 841145-841519 bp Feature: domain Description: COG3682 Location: 841160-841514 bp Feature: domain Description: COG3682 Location: 841 1 60-841 51 4 bp Feature: gene Location: 1036013-1037014 bp Feature: domain Description: MviM Location: 1036016-1036895 bp Feature: domain Description: MviM Location: 1 03601 6-1 036895 bp Feature: gene Location: 1037266-1037946 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 1037275-1037944 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 1 037275-1 037944 bp Feature: gene Location: 1039399-1040163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039504-1040128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 039504-1 0401 28 bp Feature: gene Location: 1040205-1040957 bp Feature: domain Description: PRK09183 Location: 1040208-1040943 bp Feature: domain Description: PRK091 83 Location: 1 040208-1 040943 bp Feature: gene Location: 1040950-1042245 bp Feature: domain Description: HTH_3 Location: 1041046-1041145 bp Feature: domain Description: HTH_3 Location: 1 041 046-1 041 1 45 bp Feature: domain Description: COG4584 Location: 1041154-1041325 bp Feature: domain Description: COG4584 Location: 1 041 1 54-1 041 325 bp Feature: domain Description: COG4584 Location: 1041367-1041757 bp Feature: domain Description: COG4584 Location: 1 041 367-1 041 757 bp Feature: gene Location: 1470611-1471531 bp Feature: domain Description: CcmA Location: 1470614-1471511 bp Feature: domain Description: CcmA Location: 1 47061 4-1 471 51 1 bp Feature: gene Location: 1471678-1472373 bp Feature: domain Description: OmpR Location: 1471705-1472368 bp Feature: domain Description: OmpR Location: 1 471 705-1 472368 bp Feature: gene Location: 1473733-1474059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473736-1474024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 473736-1 474024 bp Feature: gene Location: 1474134-1474646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474389-1474632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 474389-1 474632 bp Feature: gene Location: 1475241-1477238 bp Feature: domain Description: CitA Location: 1475394-1475781 bp Feature: domain Description: CitA Location: 1 475394-1 475781 bp Feature: domain Description: Tar Location: 1475967-1477236 bp Feature: domain Description: Tar Location: 1 475967-1 477236 bp Feature: gene Location: 1477577-1480018 bp Feature: domain Description: YicI Location: 1477676-1479947 bp Feature: domain Description: YicI Location: 1 477676-1 479947 bp Feature: gene Location: 1662603-1662965 bp Feature: gene Location: 1663201-1663392 bp Feature: gene Location: 1663921-1664835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664176-1664800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6641 76-1 664800 bp Feature: gene Location: 1665502-1666347 bp Feature: domain Description: Tar Location: 1665850-1666336 bp Feature: domain Description: Tar Location: 1 665850-1 666336 bp Feature: gene Location: 1666759-1667307 bp Feature: domain Description: Acetyltransf_1 Location: 1666930-1667224 bp Feature: domain Description: Acetyltransf_1 Location: 1 666930-1 667224 bp Feature: gene Location: 2172585-2175059 bp Feature: domain Description: MrcB Location: 2172615-2175021 bp Feature: domain Description: MrcB Location: 21 7261 5-21 75021 bp Feature: gene Location: 2175152-2175886 bp Feature: domain Description: PepSY Location: 2175617-2175845 bp Feature: domain Description: PepSY Location: 21 7561 7-21 75845 bp Feature: gene Location: 2177177-2178091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2177432-2178056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 77432-21 78056 bp Feature: gene Location: 2178768-2179175 bp Feature: domain Description: ndk Location: 2178774-2179170 bp Feature: domain Description: ndk Location: 21 78774-21 791 70 bp Feature: gene Location: 2179613-2179885 bp Feature: domain Description: PRK14420 Location: 2179616-2179883 bp Feature: domain Description: PRK1 4420 Location: 21 7961 6-21 79883 bp Feature: gene Location: 2244304-2245119 bp Feature: domain Description: Phage_rep_org_N Location: 2244328-2244679 bp Feature: domain Description: Phage_rep_org_N Location: 2244328-2244679 bp Feature: gene Location: 2245431-2245754 bp Feature: domain Description: Smc Location: 2245461-2245701 bp Feature: domain Description: Smc Location: 2245461 -2245701 bp Feature: gene Location: 2246827-2247741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247082-2247706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247082-2247706 bp Feature: gene Location: 2248346-2249542 bp Feature: domain Description: PRK08119 Location: 2248349-2249540 bp Feature: domain Description: PRK081 1 9 Location: 2248349-2249540 bp Feature: gene Location: 2249532-2250530 bp Feature: domain Description: FliM Location: 2249535-2250510 bp Feature: domain Description: FliM Location: 2249535-225051 0 bp Feature: gene Location: 3739936-3740286 bp Feature: domain Description: NT_KNTase_like Location: 3739990-3740278 bp Feature: domain Description: NT_KNTase_like Location: 3739990-3740278 bp Feature: gene Location: 3740457-3740594 bp Feature: gene Location: 3741550-3742866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3741808-3742504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3741 808-3742504 bp Feature: domain Description: GIIM Note: maturase Location: 3742591-3742777 bp Feature: domain Description: GIIM Note: maturase Location: 3742591 -3742777 bp Feature: gene Location: 3742981-3743793 bp Feature: domain Description: T_den_put_tspse Location: 3743089-3743194 bp Feature: domain Description: T_den_put_tspse Location: 3743089-37431 94 bp Feature: domain Description: T_den_put_tspse Location: 3743464-3743761 bp Feature: domain Description: T_den_put_tspse Location: 3743464-3743761 bp Feature: gene Location: 3744032-3744772 bp Feature: gene Location: 5126678-5127043 bp Feature: domain Description: COG4185 Location: 5126681-5127041 bp Feature: domain Description: COG41 85 Location: 51 26681 -51 27041 bp Feature: gene Location: 5127098-5127244 bp Feature: domain Description: COG4185 Location: 5127104-5127236 bp Feature: domain Description: COG41 85 Location: 51 271 04-51 27236 bp Feature: gene Location: 5127735-5129048 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5127927-5128749 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 51 27927-51 28749 bp Feature: gene Location: 5130371-5131063 bp Feature: domain Description: IscU Location: 5130464-5130884 bp Feature: domain Description: IscU Location: 51 30464-51 30884 bp Feature: gene Location: 5131089-5132090 bp Feature: domain Description: GGGtGRT Location: 5131101-5132079 bp Feature: domain Description: GGGtGRT Location: 51 31 1 01 -51 32079 bp Feature: gene Location: 5782960-5784735 bp Feature: domain Description: MdlB Location: 5782969-5784715 bp Feature: domain Description: MdlB Location: 5782969-578471 5 bp Feature: gene Location: 5784732-5786660 bp Feature: domain Description: MdlB Location: 5784840-5786631 bp Feature: domain Description: MdlB Location: 5784840-5786631 bp Feature: gene Location: 5787364-5788197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5787619-5788189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578761 9-57881 89 bp Feature: gene Location: 5789158-5789415 bp Feature: domain Description: AcpP Location: 5789197-5789392 bp Feature: domain Description: AcpP Location: 57891 97-5789392 bp Feature: gene Location: 5789412-5790890 bp Feature: domain Description: FACL_like_6 Location: 5789541-5790873 bp Feature: domain Description: FACL_like_6 Location: 5789541 -5790873 bp Feature: gene Location: 5798374-5798961 bp Feature: domain Description: ACH1 Location: 5798377-5798944 bp Feature: domain Description: ACH1 Location: 5798377-5798944 bp Feature: gene Location: 5798997-5799800 bp Feature: domain Description: AHL_lactonase_MBL-fold Location: 5799003-5799753 bp Feature: domain Description: AHL_lactonase_MBL-fold Location: 5799003-5799753 bp Feature: gene Location: 5800436-5801350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5800691-5801315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5800691 -5801 31 5 bp Feature: gene Location: 5802265-5802741 bp Feature: domain Description: Acetyltransf_1 Location: 5802427-5802703 bp Feature: domain Description: Acetyltransf_1 Location: 5802427-5802703 bp Feature: gene Location: 5803344-5804144 bp Feature: domain Description: PRK08123 Location: 5803362-5804139 bp Feature: domain Description: PRK081 23 Location: 5803362-58041 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FA_desaturase (pfam00487), RVT-GII, HTH_3 (pfam01381), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), YqiK (COG2268), Sig70_famx3 (TIGR02954), Peptidase_M56 (pfam05569), COG3682 (Predicted transcriptional regulator ), MviM (COG0673)
YjjG/YfnB(RVT-UNC), CcmA (COG4133), OmpR (COG0745), CitA (COG3290), Tar (COG0840), YicI (COG1501), Acetyltransf_1 (pfam00583), MrcB (COG0744), PepSY (pfam03413), ndk (PRK00668)
PRK14420 (acylphosphatase; Provisional), Phage_rep_org_N (pfam09681), Smc (COG1196), PRK08119 (flagellar motor switch protein; Validated), FliM (pfam02154), NT_KNTase_like (cd05403), GIIM (pfam08388), T_den_put_tspse (TIGR01784), COG4185 (Predicted ABC-type ATPase ), RVT-UG2
IscU (COG0822), GGGtGRT (pfam14057), MdlB (COG1132), AcpP (COG0236), FACL_like_6 (cd05922), ACH1 (COG0427), AHL_lactonase_MBL-fold (cd07729), PRK08123 (histidinol-phosphatase HisJ)