myRT

myRT report for GCA_002969215.1_ASM296921v1

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Seq: NEMB01000003.1 Hungateiclostridium saccincola strain A7 contig00000, whole genome shotgun sequence (3683630 bp)
Overview 1 RT 1: 96249-108346 bp 2 RT 2: 839400-841994 bp 3 RT 3: 1772981-1776302 bp 4 RT 4: 3596402-3600166 bp Neighborhood of RT #1 [96249, 109545] COG3464 COG3464 RVT-GII RVT-GII Kelch Kelch Kelch_1 RhsA RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RhsA RHS_repeat RHS_repeat Rhs_assc_core Neighborhood of RT #2 [839400, 841994] pepcterm_ATPase RVT-GII Neighborhood of RT #3 [1772981, 1776319] RVT-GII Transposase_mut Neighborhood of RT #4 [3596402, 3600166] IS285 RVT-GII GIIM Peptidase_C39B Feature: gene Location: 96249-97106 bp Feature: domain Description: COG3464 Location: 96288-96999 bp Feature: domain Description: COG3464 Location: 96288-96999 bp Feature: gene Location: 97117-97908 bp Feature: domain Description: COG3464 Location: 97555-97873 bp Feature: domain Description: COG3464 Location: 97555-97873 bp Feature: gene Location: 98184-98651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98190-98634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981 90-98634 bp Feature: gene Location: 98690-99049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98894-99032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98894-99032 bp Feature: gene Location: 99741-100262 bp Feature: gene Location: 100273-109545 bp Feature: domain Description: Kelch Location: 101350-101662 bp Feature: domain Description: Kelch Location: 1 01 350-1 01 662 bp Feature: domain Description: Kelch Location: 101674-102076 bp Feature: domain Description: Kelch Location: 1 01 674-1 02076 bp Feature: domain Description: Kelch_1 Location: 102097-102199 bp Feature: domain Description: Kelch_1 Location: 1 02097-1 021 99 bp Feature: domain Description: RhsA Location: 103546-103711 bp Feature: domain Description: RhsA Location: 1 03546-1 0371 1 bp Feature: domain Description: RHS_repeat Location: 103846-103933 bp Feature: domain Description: RHS_repeat Location: 1 03846-1 03933 bp Feature: domain Description: RHS_repeat Location: 103963-104071 bp Feature: domain Description: RHS_repeat Location: 1 03963-1 04071 bp Feature: domain Description: RHS_repeat Location: 104200-104275 bp Feature: domain Description: RHS_repeat Location: 1 04200-1 04275 bp Feature: domain Description: RHS_repeat Location: 104290-104377 bp Feature: domain Description: RHS_repeat Location: 1 04290-1 04377 bp Feature: domain Description: RHS_repeat Location: 104581-104665 bp Feature: domain Description: RHS_repeat Location: 1 04581 -1 04665 bp Feature: domain Description: RHS_repeat Location: 105094-105187 bp Feature: domain Description: RHS_repeat Location: 1 05094-1 051 87 bp Feature: domain Description: RHS_repeat Location: 105604-105718 bp Feature: domain Description: RHS_repeat Location: 1 05604-1 0571 8 bp Feature: domain Description: RHS_repeat Location: 105760-105877 bp Feature: domain Description: RHS_repeat Location: 1 05760-1 05877 bp Feature: domain Description: RHS_repeat Location: 105928-106039 bp Feature: domain Description: RHS_repeat Location: 1 05928-1 06039 bp Feature: domain Description: RHS_repeat Location: 106210-106321 bp Feature: domain Description: RHS_repeat Location: 1 0621 0-1 06321 bp Feature: domain Description: RHS_repeat Location: 106633-106732 bp Feature: domain Description: RHS_repeat Location: 1 06633-1 06732 bp Feature: domain Description: RHS_repeat Location: 106759-106870 bp Feature: domain Description: RHS_repeat Location: 1 06759-1 06870 bp Feature: domain Description: RHS_repeat Location: 106924-107020 bp Feature: domain Description: RHS_repeat Location: 1 06924-1 07020 bp Feature: domain Description: RHS_repeat Location: 107047-107143 bp Feature: domain Description: RHS_repeat Location: 1 07047-1 071 43 bp Feature: domain Description: RhsA Location: 107215-107404 bp Feature: domain Description: RhsA Location: 1 0721 5-1 07404 bp Feature: domain Description: RHS_repeat Location: 107527-107623 bp Feature: domain Description: RHS_repeat Location: 1 07527-1 07623 bp Feature: domain Description: RHS_repeat Location: 107665-107770 bp Feature: domain Description: RHS_repeat Location: 1 07665-1 07770 bp Feature: domain Description: Rhs_assc_core Location: 108106-108346 bp Feature: domain Description: Rhs_assc_core Location: 1 081 06-1 08346 bp Feature: gene Location: 839400-839636 bp Feature: gene Location: 839639-840436 bp Feature: domain Description: pepcterm_ATPase Location: 839642-840410 bp Feature: domain Description: pepcterm_ATPase Location: 839642-84041 0 bp Feature: gene Location: 840627-840938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840636-840933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840636-840933 bp Feature: gene Location: 841171-841413 bp Feature: gene Location: 841647-841994 bp Feature: gene Location: 1772981-1774030 bp Feature: gene Location: 1774624-1774866 bp Feature: gene Location: 1774965-1775495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1774986-1775331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 774986-1 775331 bp Feature: gene Location: 1775661-1775816 bp Feature: gene Location: 1775990-1776319 bp Feature: domain Description: Transposase_mut Location: 1776014-1776302 bp Feature: domain Description: Transposase_mut Location: 1 77601 4-1 776302 bp Feature: gene Location: 3596402-3596647 bp Feature: gene Location: 3596689-3597909 bp Feature: domain Description: IS285 Location: 3596749-3597895 bp Feature: domain Description: IS285 Location: 3596749-3597895 bp Feature: gene Location: 3597989-3599311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3598352-3598967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3598352-3598967 bp Feature: domain Description: GIIM Note: maturase Location: 3599024-3599252 bp Feature: domain Description: GIIM Note: maturase Location: 3599024-3599252 bp Feature: gene Location: 3599669-3599941 bp Feature: domain Description: Peptidase_C39B Location: 3599696-3599900 bp Feature: domain Description: Peptidase_C39B Location: 3599696-3599900 bp Feature: gene Location: 3599972-3600166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, Kelch (smart00612), Kelch_1 (pfam01344), RhsA (COG3209), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), pepcterm_ATPase (TIGR03015), Transposase_mut (pfam00872), IS285 (COG3328)
GIIM (pfam08388), Peptidase_C39B (cd02418)