myRT

myRT report for GCA_002971275.1_ASM297127v1

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Seq: JZMT01000030.1 Escherichia coli strain HT2012N03 NODE_50_length_373524_cov_32.525604, whole genome shotgun sequence (373598 bp)
Overview 1 RT 1: 13897-18034 bp Neighborhood of RT #1 [13897, 18034] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 13897-14244 bp Feature: domain Description: TnpB_IS66 Location: 13924-14215 bp Feature: domain Description: TnpB_IS66 Location: 1 3924-1 421 5 bp Feature: gene Location: 14264-15703 bp Feature: domain Description: LZ_Tnp_IS66 Location: 14402-14627 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 4402-1 4627 bp Feature: domain Description: zf-IS66 Location: 14648-14780 bp Feature: domain Description: zf-IS66 Location: 1 4648-1 4780 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14825-15662 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 4825-1 5662 bp Feature: gene Location: 16165-16869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16366-16864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6366-1 6864 bp Feature: gene Location: 16870-17397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16876-17020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6876-1 7020 bp Feature: domain Description: GIIM Note: maturase Location: 17098-17320 bp Feature: domain Description: GIIM Note: maturase Location: 1 7098-1 7320 bp Feature: gene Location: 17513-17659 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17525-17636 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 7525-1 7636 bp Feature: gene Location: 17867-18034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: JZMT01000044.1 Escherichia coli strain HT2012N03 NODE_92_length_169393_cov_33.005058, whole genome shotgun sequence (169467 bp)
Overview 1 RT 1: 85183-89093 bp Neighborhood of RT #1 [85183, 89093] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 85183-86052 bp Feature: domain Description: YjeJ Location: 85186-86032 bp Feature: domain Description: YjeJ Location: 85186-86032 bp Feature: gene Location: 86102-86455 bp Feature: domain Description: DUF4156 Location: 86171-86447 bp Feature: domain Description: DUF4156 Location: 86171-86447 bp Feature: gene Location: 86714-88381 bp Feature: RT Description: RVT_N Location: 86777-87011 bp Feature: RT Description: RVT_N Location: 86777-87011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87065-87710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87065-87710 bp Feature: domain Description: GIIM Note: maturase Location: 87764-87995 bp Feature: domain Description: GIIM Note: maturase Location: 87764-87995 bp Feature: domain Description: HNHc Note: nucleases Location: 88205-88367 bp Feature: domain Description: HNHc Note: nucleases Location: 882 05-88367 bp Feature: gene Location: 88518-88754 bp Feature: gene Location: 88812-89093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)