myRT

myRT report for GCA_002971295.1_ASM297129v1

Download annotations/find similar RTs

Seq: JZMB01000019.1 Escherichia coli strain HT2012ST02 125-1-1Scaffold19, whole genome shotgun sequence (51926 bp)
Overview 1 RT 1: 7593-9659 bp Neighborhood of RT #1 [7593, 9659] group_II_RT_mat RVT-GII Feature: gene Location: 7593-7898 bp Feature: gene Location: 7941-8273 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8103-8265 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 81 03-8265 bp Feature: gene Location: 8270-8755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8273-8729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8273-8729 bp Feature: gene Location: 8849-9043 bp Feature: gene Location: 9108-9659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZMB01000002.1 Escherichia coli strain HT2012ST02 125-1-1Scaffold2, whole genome shotgun sequence (650302 bp)
Overview 1 RT 1: 215714-223074 bp Neighborhood of RT #1 [215714, 223076] PRK10668 PRK11281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 215714-216361 bp Feature: domain Description: PRK10668 Location: 215717-216356 bp Feature: domain Description: PRK10668 Location: 2 15717-2 16356 bp Feature: gene Location: 216489-219851 bp Feature: domain Description: PRK11281 Location: 216513-219843 bp Feature: domain Description: PRK112 81 Location: 2 16513-2 19843 bp Feature: gene Location: 220143-221843 bp Feature: domain Description: RVT_N Location: 220197-220440 bp Feature: domain Description: RVT_N Location: 2 2 0197-2 2 0440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220485-221121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 0485-2 2 112 1 bp Feature: domain Description: GIIM Note: maturase Location: 221172-221406 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 1172 -2 2 1406 bp Feature: domain Description: HNHc Note: nucleases Location: 221637-221787 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 1637-2 2 1787 bp Feature: gene Location: 221880-222008 bp Feature: gene Location: 222330-223076 bp Feature: domain Description: PRK13699 Location: 222465-223074 bp Feature: domain Description: PRK13699 Location: 2 2 2 465-2 2 3074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10668 (DNA-binding transcriptional repressor AcrR; Provisional), PRK11281 (mechanosensitive channel MscK), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: JZMB01000004.1 Escherichia coli strain HT2012ST02 125-1-1Scaffold4, whole genome shotgun sequence (382478 bp)
Overview 1 RT 1: 99270-106345 bp Neighborhood of RT #1 [99270, 106345] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99270-99560 bp Feature: gene Location: 99570-100631 bp Feature: domain Description: HTH_29 Location: 99690-99861 bp Feature: domain Description: HTH_29 Location: 99690-99861 bp Feature: domain Description: HTH_33 Location: 99894-100056 bp Feature: domain Description: HTH_3 3 Location: 99894-100056 bp Feature: domain Description: DDE_3 Location: 100098-100527 bp Feature: domain Description: DDE_3 Location: 100098-100527 bp Feature: gene Location: 100733-102271 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101162-101618 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101162-101618 bp Feature: gene Location: 102328-102459 bp Feature: gene Location: 102494-106345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: JZMB01000044.1 Escherichia coli strain HT2012ST02 125-1-1Scaffold44, whole genome shotgun sequence (7601 bp)
Overview 1 RT 1: 4006-7599 bp Neighborhood of RT #1 [4006, 7599] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4006-4239 bp Feature: domain Description: DUF905 Location: 4036-4234 bp Feature: domain Description: DUF905 Location: 4 036-4 234 bp Feature: gene Location: 4309-4761 bp Feature: domain Description: PRK13732 Location: 4315-4759 bp Feature: domain Description: PRK13732 Location: 4 315-4 759 bp Feature: gene Location: 4956-6857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5223-6054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5223-6054 bp Feature: domain Description: Intron_maturas2 Location: 6168-6426 bp Feature: domain Description: Intron_maturas2 Location: 6168-64 26 bp Feature: domain Description: HNHc Note: nucleases Location: 6600-6762 bp Feature: domain Description: HNHc Note: nucleases Location: 6600-6762 bp Feature: gene Location: 7420-7599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZMB01000070.1 Escherichia coli strain HT2012ST02 125-1-1Scaffold70, whole genome shotgun sequence (1514 bp)
Overview 1 RT 1: 152-1349 bp Neighborhood of RT #1 [152, 1349] InsE RVT-GII Feature: gene Location: 152-331 bp Feature: domain Description: InsE Location: 161-320 bp Feature: domain Description: InsE Location: 161-320 bp Feature: gene Location: 403-597 bp Feature: gene Location: 567-836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-768 bp Feature: gene Location: 1008-1349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII