myRT

myRT report for GCA_002971585.1_ASM297158v1

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Seq: JZNM01000122.1 Escherichia coli strain HT2012048 scaffold122, whole genome shotgun sequence (596015 bp)
Overview 1 RT 1: 99257-106332 bp Neighborhood of RT #1 [99257, 106332] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99257-99547 bp Feature: gene Location: 99557-100618 bp Feature: domain Description: HTH_29 Location: 99677-99848 bp Feature: domain Description: HTH_29 Location: 99677-99848 bp Feature: domain Description: HTH_33 Location: 99881-100043 bp Feature: domain Description: HTH_33 Location: 99881 -1 00043 bp Feature: domain Description: DDE_3 Location: 100085-100514 bp Feature: domain Description: DDE_3 Location: 1 00085-1 0051 4 bp Feature: gene Location: 100720-102258 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101149-101605 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 01 1 49-1 01 605 bp Feature: gene Location: 102315-102446 bp Feature: gene Location: 102481-106332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: JZNM01000124.1 Escherichia coli strain HT2012048 scaffold124, whole genome shotgun sequence (15352 bp)
Overview 1 RT 1: 13350-15349 bp Neighborhood of RT #1 [13350, 15349] trans_reg_C RVT-GII InsE Feature: gene Location: 13350-13652 bp Feature: domain Description: trans_reg_C Location: 13398-13593 bp Feature: domain Description: trans_reg_C Location: 13398-13593 bp Feature: gene Location: 13950-14291 bp Feature: gene Location: 14463-14732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14568-14661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14568-14661 bp Feature: gene Location: 14939-15148 bp Feature: domain Description: InsE Location: 14951-15137 bp Feature: domain Description: InsE Location: 14951-15137 bp Feature: gene Location: 15194-15349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963)

Seq: JZNM01000044.1 Escherichia coli strain HT2012048 scaffold44, whole genome shotgun sequence (11790 bp)
Overview 1 RT 1: 5573-8950 bp Neighborhood of RT #1 [5573, 9036] ArgR RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 5573-6205 bp Feature: domain Description: ArgR Location: 5759-6191 bp Feature: domain Description: ArgR Location: 5759-6191 bp Feature: gene Location: 6443-6661 bp Feature: gene Location: 6911-7681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6914-7328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6914-73 28 bp Feature: domain Description: GIIM Note: maturase Location: 7379-7544 bp Feature: domain Description: GIIM Note: maturase Location: 73 79-7544 bp Feature: gene Location: 7720-8202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8041-8128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8041-8128 bp Feature: gene Location: 8185-8649 bp Feature: gene Location: 8650-9036 bp Feature: domain Description: CdiI_3 Location: 8674-8950 bp Feature: domain Description: CdiI_3 Location: 8674-8950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgR (COG1438), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)

Seq: JZNM01000006.1 Escherichia coli strain HT2012048 scaffold6, whole genome shotgun sequence (2411 bp)
Overview 1 RT 1: 158-1718 bp Neighborhood of RT #1 [158, 1718] RVT-GII group_II_RT_mat Feature: gene Location: 158-352 bp Feature: gene Location: 446-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 9-905 bp Feature: gene Location: 928-1260 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1090-1252 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1090-1252 bp Feature: gene Location: 1488-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZNM01000060.1 Escherichia coli strain HT2012048 scaffold60, whole genome shotgun sequence (7593 bp)
Overview 1 RT 1: 4023-7590 bp Neighborhood of RT #1 [4023, 7590] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4023-4256 bp Feature: domain Description: DUF905 Location: 4053-4251 bp Feature: domain Description: DUF905 Location: 405 3-425 1 bp Feature: gene Location: 4318-4770 bp Feature: domain Description: PRK13732 Location: 4324-4768 bp Feature: domain Description: PRK13732 Location: 4324-4768 bp Feature: gene Location: 4965-6866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5232-6063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 232-6063 bp Feature: domain Description: Intron_maturas2 Location: 6177-6435 bp Feature: domain Description: Intron_maturas2 Location: 6177-6435 bp Feature: domain Description: HNHc Note: nucleases Location: 6609-6771 bp Feature: domain Description: HNHc Note: nucleases Location: 6609-6771 bp Feature: gene Location: 7429-7590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZNM01000098.1 Escherichia coli strain HT2012048 scaffold98, whole genome shotgun sequence (2451 bp)
Overview 1 RT 1: 91-2448 bp Neighborhood of RT #1 [91, 2448] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 91-1791 bp Feature: domain Description: RVT_N Location: 145-388 bp Feature: domain Description: RVT_N Location: 145-388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-106 9 bp Feature: domain Description: GIIM Note: maturase Location: 1120-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1120-1354 bp Feature: domain Description: HNHc Note: nucleases Location: 1585-1735 bp Feature: domain Description: HNHc Note: nucleases Location: 1585-1735 bp Feature: gene Location: 2278-2448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)