myRT

myRT report for GCA_002971615.1_ASM297161v1

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Seq: JZNJ01000072.1 Escherichia coli strain HT2012DB25 NODE_154_length_19876_cov_30.626736, whole genome shotgun sequence (19950 bp)
Overview 1 RT 1: 12034-16714 bp Neighborhood of RT #1 [12034, 16716] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C PRK13699 Feature: gene Location: 12034-12303 bp Feature: gene Location: 12784-12924 bp Feature: gene Location: 12946-14670 bp Feature: domain Description: RVT_N Location: 13003-13240 bp Feature: domain Description: RVT_N Location: 1 3003-1 3240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13291-13939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3291 -1 3939 bp Feature: domain Description: YkfC Location: 14071-14227 bp Feature: domain Description: YkfC Location: 1 4071 -1 4227 bp Feature: domain Description: HNHc Note: nucleases Location: 14455-14614 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4455-1 461 4 bp Feature: gene Location: 14747-15649 bp Feature: domain Description: DUF1281 Location: 14816-15344 bp Feature: domain Description: DUF1 281 Location: 1 481 6-1 5344 bp Feature: domain Description: DUF1281_C Location: 15350-15590 bp Feature: domain Description: DUF1 281 _C Location: 1 5350-1 5590 bp Feature: gene Location: 16033-16716 bp Feature: domain Description: PRK13699 Location: 16036-16714 bp Feature: domain Description: PRK1 3699 Location: 1 6036-1 671 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), PRK13699 (putative methylase; Provisional)

Seq: JZNJ01000011.1 Escherichia coli strain HT2012DB25 NODE_16_length_14804_cov_64.605240, whole genome shotgun sequence (14878 bp)
Overview 1 RT 1: 4737-8437 bp Neighborhood of RT #1 [4737, 8451] PHA02517 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 LZ_Tnp_IS66 Feature: gene Location: 4737-4988 bp Feature: domain Description: PHA02517 Location: 4746-4968 bp Feature: domain Description: PHA02 517 Location: 4746-4968 bp Feature: gene Location: 5019-5165 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5031-5142 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5031-5142 bp Feature: gene Location: 5281-6513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5482-6136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5482 -6136 bp Feature: domain Description: GIIM Note: maturase Location: 6214-6436 bp Feature: domain Description: GIIM Note: maturase Location: 62 14-6436 bp Feature: gene Location: 7131-7613 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7140-7611 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7140-7611 bp Feature: gene Location: 8122-8451 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8371-8437 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8371-8437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007)

Seq: JZNJ01000015.1 Escherichia coli strain HT2012DB25 NODE_20_length_8988_cov_60.142857, whole genome shotgun sequence (9062 bp)
Overview 1 RT 1: 7459-9059 bp Neighborhood of RT #1 [7459, 9059] group_II_RT_mat RVT-GII Feature: gene Location: 7459-7764 bp Feature: gene Location: 7807-8139 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7969-8131 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7969-813 1 bp Feature: gene Location: 8136-8621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8139-8595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813 9-8595 bp Feature: gene Location: 8805-9059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZNJ01000026.1 Escherichia coli strain HT2012DB25 NODE_37_length_3365_cov_43.956612, whole genome shotgun sequence (3439 bp)
Overview 1 RT 1: 102-2968 bp Neighborhood of RT #1 [102, 2994] RVT-AbiP2 Acetyltransf_10 DUF1778 Feature: gene Location: 102-233 bp Feature: gene Location: 290-1828 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 719-1175 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 719-1175 bp Feature: gene Location: 2202-2717 bp Feature: domain Description: Acetyltransf_10 Location: 2460-2640 bp Feature: domain Description: Acetyltransf_10 Location: 24 60-264 0 bp Feature: gene Location: 2701-2994 bp Feature: domain Description: DUF1778 Location: 2734-2968 bp Feature: domain Description: DUF1778 Location: 2734 -2968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Acetyltransf_10 (pfam13673), DUF1778 (pfam08681)

Seq: JZNJ01000005.1 Escherichia coli strain HT2012DB25 NODE_6_length_1606_cov_110.130135, whole genome shotgun sequence (1680 bp)
Overview 1 RT 1: 1-1679 bp Neighborhood of RT #1 [1, 1679] RVT-GII Feature: gene Location: 1-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: gene Location: 1485-1679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII