myRT

myRT report for GCA_002971635.1_ASM297163v1

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Seq: JZNE01000027.1 Escherichia coli strain HT2012DB13 NODE_34_length_2333_cov_71.332619, whole genome shotgun sequence (2387 bp)
Overview 1 RT 1: 134-1694 bp Neighborhood of RT #1 [134, 1694] RVT-GII group_II_RT_mat Feature: gene Location: 134-328 bp Feature: gene Location: 422-907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-881 bp Feature: gene Location: 904-1236 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1066-1228 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 066-1 228 bp Feature: gene Location: 1464-1694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZNE01000038.1 Escherichia coli strain HT2012DB13 NODE_47_length_13077_cov_105.000229, whole genome shotgun sequence (13131 bp)
Overview 1 RT 1: 5314-10100 bp Neighborhood of RT #1 [5314, 10100] StbA RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 5314-6276 bp Feature: domain Description: StbA Location: 5317-6265 bp Feature: domain Description: StbA Location: 5317-62 65 bp Feature: gene Location: 6263-6715 bp Feature: gene Location: 6945-8645 bp Feature: domain Description: RVT_N Location: 6999-7242 bp Feature: domain Description: RVT_N Location: 6999-72 42 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7287-7923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 87-792 3 bp Feature: domain Description: GIIM Note: maturase Location: 7974-8208 bp Feature: domain Description: GIIM Note: maturase Location: 7974-82 08 bp Feature: domain Description: HNHc Note: nucleases Location: 8439-8589 bp Feature: domain Description: HNHc Note: nucleases Location: 8439-8589 bp Feature: gene Location: 9132-9878 bp Feature: domain Description: PRK13699 Location: 9267-9876 bp Feature: domain Description: PRK13699 Location: 92 67-9876 bp Feature: gene Location: 9879-10100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: JZNE01000122.1 Escherichia coli strain HT2012DB13 NODE_551_length_595441_cov_51.703461, whole genome shotgun sequence (595495 bp)
Overview 1 RT 1: 488290-496383 bp Neighborhood of RT #1 [488290, 496383] Arm-DNA-bind_3 RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 488290-489039 bp Feature: domain Description: Arm-DNA-bind_3 Location: 488320-488575 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4883 20-488575 bp Feature: gene Location: 489302-493159 bp Feature: gene Location: 493382-494920 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 493811-494267 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 493 811-494267 bp Feature: gene Location: 495022-496059 bp Feature: domain Description: HTH_29 Location: 495118-495289 bp Feature: domain Description: HTH_29 Location: 495118-495289 bp Feature: domain Description: HTH_33 Location: 495322-495484 bp Feature: domain Description: HTH_3 3 Location: 4953 22-495484 bp Feature: domain Description: DDE_3 Location: 495526-495955 bp Feature: domain Description: DDE_3 Location: 495526-495955 bp Feature: gene Location: 496093-496383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: JZNE01000053.1 Escherichia coli strain HT2012DB13 NODE_69_length_9043_cov_72.982750, whole genome shotgun sequence (9097 bp)
Overview 1 RT 1: 7095-9094 bp Neighborhood of RT #1 [7095, 9094] trans_reg_C RVT-GII InsE Feature: gene Location: 7095-7397 bp Feature: domain Description: trans_reg_C Location: 7143-7338 bp Feature: domain Description: trans_reg_C Location: 714 3-7338 bp Feature: gene Location: 7695-8036 bp Feature: gene Location: 8208-8477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8313-8406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8313-84 06 bp Feature: gene Location: 8684-8893 bp Feature: domain Description: InsE Location: 8696-8882 bp Feature: domain Description: InsE Location: 8696-8882 bp Feature: gene Location: 8939-9094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963)

Seq: JZNE01000005.1 Escherichia coli strain HT2012DB13 NODE_6_length_7539_cov_82.188751, whole genome shotgun sequence (7593 bp)
Overview 1 RT 1: 1-3566 bp Neighborhood of RT #1 [1, 3571] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1-126 bp Feature: gene Location: 384-593 bp Feature: gene Location: 728-2629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995 -1826 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: HNHc Note: nucleases Location: 2372-2534 bp Feature: domain Description: HNHc Note: nucleases Location: 2372-25 34 bp Feature: gene Location: 2824-3276 bp Feature: domain Description: PRK13732 Location: 2830-3274 bp Feature: domain Description: PRK13732 Location: 2830-3274 bp Feature: gene Location: 3338-3571 bp Feature: domain Description: DUF905 Location: 3368-3566 bp Feature: domain Description: DUF905 Location: 3368-35 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZNE01000066.1 Escherichia coli strain HT2012DB13 NODE_98_length_11736_cov_49.489349, whole genome shotgun sequence (11790 bp)
Overview 1 RT 1: 2755-5348 bp Neighborhood of RT #1 [2755, 5348] CdiI_3 RVT-GII RVT-GII GIIM Feature: gene Location: 2755-3141 bp Feature: domain Description: CdiI_3 Location: 2779-3055 bp Feature: domain Description: CdiI_3 Location: 2779-3055 bp Feature: gene Location: 3287-3481 bp Feature: gene Location: 3589-4071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3910-3997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3910-3997 bp Feature: gene Location: 4110-4880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-4527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-4527 bp Feature: domain Description: GIIM Note: maturase Location: 4578-4743 bp Feature: domain Description: GIIM Note: maturase Location: 4578-4743 bp Feature: gene Location: 4932-5060 bp Feature: gene Location: 5130-5348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388)