myRT

myRT report for GCA_002971735.1_ASM297173v1

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Seq: JZNK01000018.1 Escherichia coli strain HT2012DB27 NODE_22_length_24928_cov_89.769936, whole genome shotgun sequence (24992 bp)
Overview 1 RT 1: 6905-9761 bp Neighborhood of RT #1 [6905, 9781] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PHA02517 Feature: gene Location: 6905-7387 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6914-7385 bp Feature: domain Description: DDE_Tnp_IS66 Location: 691 4-7385 bp Feature: gene Location: 7403-7543 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7409-7502 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7409-7502 bp Feature: gene Location: 8005-9237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8206-8860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8206-8860 bp Feature: domain Description: GIIM Note: maturase Location: 8938-9160 bp Feature: domain Description: GIIM Note: maturase Location: 8938-91 60 bp Feature: gene Location: 9353-9499 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9365-9476 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9365-9476 bp Feature: gene Location: 9530-9781 bp Feature: domain Description: PHA02517 Location: 9539-9761 bp Feature: domain Description: PHA0251 7 Location: 9539-9761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JZNK01000019.1 Escherichia coli strain HT2012DB27 NODE_23_length_6011_cov_90.885040, whole genome shotgun sequence (6075 bp)
Overview 1 RT 1: 4482-6073 bp Neighborhood of RT #1 [4482, 6073] group_II_RT_mat RVT-GII Feature: gene Location: 4482-4787 bp Feature: gene Location: 4830-5162 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4992-5154 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4992 -5154 bp Feature: gene Location: 5159-5644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5162-5618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5162 -5618 bp Feature: gene Location: 5828-6073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZNK01000092.1 Escherichia coli strain HT2012DB27 NODE_309_length_10658_cov_42.102741, whole genome shotgun sequence (10722 bp)
Overview 1 RT 1: 4993-8477 bp Neighborhood of RT #1 [4993, 8477] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 4993-5145 bp Feature: gene Location: 5215-6117 bp Feature: domain Description: DUF1281 Location: 5284-5812 bp Feature: domain Description: DUF1281 Location: 5284-5812 bp Feature: domain Description: DUF1281_C Location: 5818-6058 bp Feature: domain Description: DUF1281_C Location: 5818-6058 bp Feature: gene Location: 6194-7918 bp Feature: domain Description: RVT_N Location: 6251-6488 bp Feature: domain Description: RVT_N Location: 6251-6488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6539-7187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653 9-7187 bp Feature: domain Description: YkfC Location: 7319-7475 bp Feature: domain Description: YkfC Location: 73 19-7475 bp Feature: domain Description: HNHc Note: nucleases Location: 7703-7862 bp Feature: domain Description: HNHc Note: nucleases Location: 7703 -7862 bp Feature: gene Location: 7959-8099 bp Feature: gene Location: 8181-8477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JZNK01000029.1 Escherichia coli strain HT2012DB27 NODE_41_length_3985_cov_50.942032, whole genome shotgun sequence (4049 bp)
Overview 1 RT 1: 18-3588 bp Neighborhood of RT #1 [18, 3614] Tra5 RVT-AbiP2 Acetyltransf_10 DUF1778 Feature: gene Location: 18-335 bp Feature: gene Location: 365-664 bp Feature: domain Description: Tra5 Location: 380-656 bp Feature: domain Description: Tra5 Location: 380-656 bp Feature: gene Location: 910-2448 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1339-1795 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1339-1795 bp Feature: gene Location: 2822-3337 bp Feature: domain Description: Acetyltransf_10 Location: 3080-3260 bp Feature: domain Description: Acetyltransf_10 Location: 3080-3260 bp Feature: gene Location: 3321-3614 bp Feature: domain Description: DUF1778 Location: 3354-3588 bp Feature: domain Description: DUF1778 Location: 3354 -3588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-AbiP2, Acetyltransf_10 (pfam13673), DUF1778 (pfam08681)

Seq: JZNK01000007.1 Escherichia coli strain HT2012DB27 NODE_7_length_2253_cov_157.345764, whole genome shotgun sequence (2317 bp)
Overview 1 RT 1: 2-2137 bp Neighborhood of RT #1 [2, 2232] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-196 bp Feature: gene Location: 331-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 98-1429 bp Feature: domain Description: Intron_maturas2 Location: 1543-1801 bp Feature: domain Description: Intron_maturas2 Location: 15 43-1801 bp Feature: domain Description: HNHc Note: nucleases Location: 1975-2137 bp Feature: domain Description: HNHc Note: nucleases Location: 1975 -2137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)