myRT

myRT report for GCA_002971755.1_ASM297175v1

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Seq: JZNN01000020.1 Escherichia coli strain HT2012049 scaffold14, whole genome shotgun sequence (2411 bp)
Overview 1 RT 1: 924-2410 bp Neighborhood of RT #1 [924, 2410] group_II_RT_mat RVT-GII Feature: gene Location: 924-1121 bp Feature: gene Location: 1152-1484 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1314-1476 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 31 4-1 476 bp Feature: gene Location: 1481-1966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1484-1940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 484-1 940 bp Feature: gene Location: 2150-2410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZNN01000045.1 Escherichia coli strain HT2012049 scaffold32, whole genome shotgun sequence (2451 bp)
Overview 1 RT 1: 502-2305 bp Neighborhood of RT #1 [502, 2361] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 502-636 bp Feature: gene Location: 661-2361 bp Feature: domain Description: RVT_N Location: 715-958 bp Feature: domain Description: RVT_N Location: 715-958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003-1639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003-1639 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1924 bp Feature: domain Description: GIIM Note: maturase Location: 1690-192 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2155-2305 bp Feature: domain Description: HNHc Note: nucleases Location: 2 155-2 305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZNN01000010.1 Escherichia coli strain HT2012049 scaffold4, whole genome shotgun sequence (7593 bp)
Overview 1 RT 1: 1-3566 bp Neighborhood of RT #1 [1, 3571] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1-126 bp Feature: gene Location: 384-593 bp Feature: gene Location: 728-2629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1826 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: HNHc Note: nucleases Location: 2372-2534 bp Feature: domain Description: HNHc Note: nucleases Location: 23 72-253 4 bp Feature: gene Location: 2824-3276 bp Feature: domain Description: PRK13732 Location: 2830-3274 bp Feature: domain Description: PRK13 73 2 Location: 283 0-3 274 bp Feature: gene Location: 3338-3571 bp Feature: domain Description: DUF905 Location: 3368-3566 bp Feature: domain Description: DUF905 Location: 3 3 68-3 566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZNN01000054.1 Escherichia coli strain HT2012049 scaffold41, whole genome shotgun sequence (11790 bp)
Overview 1 RT 1: 5573-8950 bp Neighborhood of RT #1 [5573, 9036] ArgR RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 5573-6205 bp Feature: domain Description: ArgR Location: 5759-6191 bp Feature: domain Description: ArgR Location: 5759-6191 bp Feature: gene Location: 6443-6661 bp Feature: gene Location: 6911-7681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6914-7328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6914 -7328 bp Feature: domain Description: GIIM Note: maturase Location: 7379-7544 bp Feature: domain Description: GIIM Note: maturase Location: 7379-754 4 bp Feature: gene Location: 7720-8202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8041-8128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804 1-8128 bp Feature: gene Location: 8185-8649 bp Feature: gene Location: 8650-9036 bp Feature: domain Description: CdiI_3 Location: 8674-8950 bp Feature: domain Description: CdiI_3 Location: 8674 -8950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgR (COG1438), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)

Seq: JZNN01000134.1 Escherichia coli strain HT2012049 scaffold77.9, whole genome shotgun sequence (68239 bp)
Overview 1 RT 1: 15361-22436 bp Neighborhood of RT #1 [15361, 22436] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 15361-15651 bp Feature: gene Location: 15661-16722 bp Feature: domain Description: HTH_29 Location: 15781-15952 bp Feature: domain Description: HTH_29 Location: 15 781-15 95 2 bp Feature: domain Description: HTH_33 Location: 15985-16147 bp Feature: domain Description: HTH_33 Location: 15 985 -16147 bp Feature: domain Description: DDE_3 Location: 16189-16618 bp Feature: domain Description: DDE_3 Location: 16189-16618 bp Feature: gene Location: 16824-18362 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 17253-17709 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1725 3-17709 bp Feature: gene Location: 18419-18550 bp Feature: gene Location: 18585-22436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: JZNN01000154.1 Escherichia coli strain HT2012049 scaffold80.3, whole genome shotgun sequence (9871 bp)
Overview 1 RT 1: 7869-9868 bp Neighborhood of RT #1 [7869, 9868] trans_reg_C RVT-GII InsE Feature: gene Location: 7869-8171 bp Feature: domain Description: trans_reg_C Location: 7917-8112 bp Feature: domain Description: trans_reg_C Location: 7917-8112 bp Feature: gene Location: 8469-8810 bp Feature: gene Location: 8982-9251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9087-9180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9087-9180 bp Feature: gene Location: 9458-9667 bp Feature: domain Description: InsE Location: 9470-9656 bp Feature: domain Description: InsE Location: 9470-96 56 bp Feature: gene Location: 9713-9868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963)