myRT

myRT report for GCA_002971815.1_ASM297181v1

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Seq: JZNY01000010.1 Escherichia coli strain HT2012103 scaffold10, whole genome shotgun sequence (8913 bp)
Overview 1 RT 1: 134-1694 bp Neighborhood of RT #1 [134, 1694] RVT-GII group_II_RT_mat Feature: gene Location: 134-328 bp Feature: gene Location: 422-907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-881 bp Feature: gene Location: 904-1236 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1066-1228 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 066-1 228 bp Feature: gene Location: 1464-1694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZNY01000016.1 Escherichia coli strain HT2012103 scaffold16, whole genome shotgun sequence (3401 bp)
Overview 1 RT 1: 428-3320 bp Neighborhood of RT #1 [428, 3320] DUF1778 Acetyltransf_10 RVT-AbiP2 Feature: gene Location: 428-721 bp Feature: domain Description: DUF1778 Location: 461-695 bp Feature: domain Description: DUF1778 Location: 461-695 bp Feature: gene Location: 705-1220 bp Feature: domain Description: Acetyltransf_10 Location: 963-1143 bp Feature: domain Description: Acetyltransf_10 Location: 963-1143 bp Feature: gene Location: 1594-3132 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2023-2479 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 02 3-2 479 bp Feature: gene Location: 3189-3320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1778 (pfam08681), Acetyltransf_10 (pfam13673), RVT-AbiP2

Seq: JZNY01000059.1 Escherichia coli strain HT2012103 scaffold59, whole genome shotgun sequence (34638 bp)
Overview 1 RT 1: 4069-7553 bp Neighborhood of RT #1 [4069, 7553] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 4069-4221 bp Feature: gene Location: 4291-5193 bp Feature: domain Description: DUF1281 Location: 4360-4888 bp Feature: domain Description: DUF1281 Location: 43 60-4888 bp Feature: domain Description: DUF1281_C Location: 4894-5134 bp Feature: domain Description: DUF1281_C Location: 4894-513 4 bp Feature: gene Location: 5270-6994 bp Feature: domain Description: RVT_N Location: 5327-5564 bp Feature: domain Description: RVT_N Location: 53 27-5564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5615-6263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5615-6263 bp Feature: domain Description: YkfC Location: 6395-6551 bp Feature: domain Description: YkfC Location: 63 95-6551 bp Feature: domain Description: HNHc Note: nucleases Location: 6779-6938 bp Feature: domain Description: HNHc Note: nucleases Location: 6779-693 8 bp Feature: gene Location: 7035-7175 bp Feature: gene Location: 7257-7553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JZNY01000061.1 Escherichia coli strain HT2012103 scaffold61, whole genome shotgun sequence (2449 bp)
Overview 1 RT 1: 2-2448 bp Neighborhood of RT #1 [2, 2448] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-196 bp Feature: gene Location: 331-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598-14 29 bp Feature: domain Description: Intron_maturas2 Location: 1543-1801 bp Feature: domain Description: Intron_maturas2 Location: 154 3-1801 bp Feature: domain Description: HNHc Note: nucleases Location: 1975-2137 bp Feature: domain Description: HNHc Note: nucleases Location: 1975-2137 bp Feature: gene Location: 2272-2448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZNY01000008.1 Escherichia coli strain HT2012103 scaffold8, whole genome shotgun sequence (24871 bp)
Overview 1 RT 1: 7246-10102 bp Neighborhood of RT #1 [7246, 10122] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PHA02517 Feature: gene Location: 7246-7728 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7255-7726 bp Feature: domain Description: DDE_Tnp_IS66 Location: 725 5 -7726 bp Feature: gene Location: 7744-7884 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7750-7843 bp Feature: domain Description: DDE_Tnp_IS66 Location: 775 0-7843 bp Feature: gene Location: 8346-9578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8547-9201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 47-9201 bp Feature: domain Description: GIIM Note: maturase Location: 9279-9501 bp Feature: domain Description: GIIM Note: maturase Location: 9279-95 01 bp Feature: gene Location: 9694-9840 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9706-9817 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9706-9817 bp Feature: gene Location: 9871-10122 bp Feature: domain Description: PHA02517 Location: 9880-10102 bp Feature: domain Description: PHA025 17 Location: 9880-10102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)