myRT

myRT report for GCA_002971965.1_ASM297196v1

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Seq: JZOL01000085.1 Escherichia coli strain HT2012039 NODE_178_length_34646_cov_44.549961, whole genome shotgun sequence (34720 bp)
Overview 1 RT 1: 1044-4926 bp Neighborhood of RT #1 [1044, 4931] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 1044-1760 bp Feature: domain Description: rph Location: 1047-1755 bp Feature: domain Description: rph Location: 1 047-1 755 bp Feature: gene Location: 1811-2467 bp Feature: domain Description: pyrE Location: 1829-2462 bp Feature: domain Description: pyrE Location: 1 829-2462 bp Feature: gene Location: 2765-3724 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2900-3449 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2900-3449 bp Feature: gene Location: 3770-4366 bp Feature: domain Description: slmA Location: 3776-4352 bp Feature: domain Description: slmA Location: 3776-4352 bp Feature: gene Location: 4473-4931 bp Feature: domain Description: dut Location: 4479-4926 bp Feature: domain Description: dut Location: 4479-4926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JZOL01000039.1 Escherichia coli strain HT2012039 NODE_61_length_48926_cov_42.234924, whole genome shotgun sequence (49000 bp)
Overview 1 RT 1: 2358-6480 bp Neighborhood of RT #1 [2358, 6485] RVT-GII GIIM DDE_Tnp_1_assoc PleD Feature: gene Location: 2358-2702 bp Feature: gene Location: 3051-3332 bp Feature: gene Location: 3301-4551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3505-4162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3505-4162 bp Feature: domain Description: GIIM Note: maturase Location: 4246-4459 bp Feature: domain Description: GIIM Note: maturase Location: 42 46-4459 bp Feature: gene Location: 4833-5108 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4839-5040 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4839-5040 bp Feature: gene Location: 5382-6485 bp Feature: domain Description: PleD Location: 5949-6480 bp Feature: domain Description: PleD Location: 5949-6480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), PleD (COG3706)