myRT

myRT report for GCA_002972045.1_ASM297204v1

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Seq: JZOO01000011.1 Escherichia coli strain HT2012069 NODE_14_length_8998_cov_37.966103, whole genome shotgun sequence (9082 bp)
Overview 1 RT 1: 164-1724 bp Neighborhood of RT #1 [164, 1724] RVT-GII group_II_RT_mat Feature: gene Location: 164-358 bp Feature: gene Location: 452-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455-911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455-91 1 bp Feature: gene Location: 934-1266 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1096-1258 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 096-1 258 bp Feature: gene Location: 1494-1724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZOO01000075.1 Escherichia coli strain HT2012069 NODE_155_length_22739_cov_28.412903, whole genome shotgun sequence (22823 bp)
Overview 1 RT 1: 19300-22820 bp Neighborhood of RT #1 [19300, 22820] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 19300-19596 bp Feature: gene Location: 19697-19837 bp Feature: gene Location: 19859-21583 bp Feature: domain Description: RVT_N Location: 19916-20153 bp Feature: domain Description: RVT_N Location: 19916-2 0153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20204-20852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 04-2 0852 bp Feature: domain Description: YkfC Location: 20984-21140 bp Feature: domain Description: YkfC Location: 2 0984-2 1140 bp Feature: domain Description: HNHc Note: nucleases Location: 21368-21527 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1368-2 152 7 bp Feature: gene Location: 21660-22562 bp Feature: domain Description: DUF1281 Location: 21729-22257 bp Feature: domain Description: DUF12 81 Location: 2 172 9-2 2 2 57 bp Feature: domain Description: DUF1281_C Location: 22263-22503 bp Feature: domain Description: DUF12 81_C Location: 2 2 2 63-2 2 503 bp Feature: gene Location: 22632-22820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: JZOO01000021.1 Escherichia coli strain HT2012069 NODE_28_length_5606_cov_36.700676, whole genome shotgun sequence (5690 bp)
Overview 1 RT 1: 1730-5396 bp Neighborhood of RT #1 [1730, 5401] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1730-1993 bp Feature: gene Location: 2180-2422 bp Feature: gene Location: 2557-4458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2824-3655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2824-3 655 bp Feature: domain Description: Intron_maturas2 Location: 3769-4027 bp Feature: domain Description: Intron_maturas2 Location: 3 769-4027 bp Feature: domain Description: HNHc Note: nucleases Location: 4201-4363 bp Feature: domain Description: HNHc Note: nucleases Location: 4201-43 63 bp Feature: gene Location: 4653-5105 bp Feature: domain Description: PRK13732 Location: 4659-5103 bp Feature: domain Description: PRK13 73 2 Location: 4659-5103 bp Feature: gene Location: 5168-5401 bp Feature: domain Description: DUF905 Location: 5198-5396 bp Feature: domain Description: DUF905 Location: 5198-53 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZOO01000031.1 Escherichia coli strain HT2012069 NODE_41_length_24965_cov_37.385059, whole genome shotgun sequence (25049 bp)
Overview 1 RT 1: 6925-9781 bp Neighborhood of RT #1 [6925, 9801] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PHA02517 Feature: gene Location: 6925-7407 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6934-7405 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6934 -74 05 bp Feature: gene Location: 7423-7563 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7429-7522 bp Feature: domain Description: DDE_Tnp_IS66 Location: 74 29-7522 bp Feature: gene Location: 8025-9257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8226-8880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8226-8880 bp Feature: domain Description: GIIM Note: maturase Location: 8958-9180 bp Feature: domain Description: GIIM Note: maturase Location: 8958-9180 bp Feature: gene Location: 9373-9519 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9385-9496 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9385-94 96 bp Feature: gene Location: 9550-9801 bp Feature: domain Description: PHA02517 Location: 9559-9781 bp Feature: domain Description: PHA02517 Location: 9559-9781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JZOO01000043.1 Escherichia coli strain HT2012069 NODE_70_length_4005_cov_25.594507, whole genome shotgun sequence (4089 bp)
Overview 1 RT 1: 182-3608 bp Neighborhood of RT #1 [182, 3634] PHA02517 rve_2 RVT-AbiP2 Acetyltransf_10 DUF1778 Feature: gene Location: 182-388 bp Feature: domain Description: PHA02517 Location: 185-359 bp Feature: domain Description: PHA025 17 Location: 185 -35 9 bp Feature: gene Location: 439-684 bp Feature: domain Description: rve_2 Location: 511-679 bp Feature: domain Description: rve_2 Location: 5 11-679 bp Feature: gene Location: 930-2468 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1359-1815 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 135 9-1815 bp Feature: gene Location: 2842-3357 bp Feature: domain Description: Acetyltransf_10 Location: 3100-3280 bp Feature: domain Description: Acetyltransf_10 Location: 3100-3280 bp Feature: gene Location: 3341-3634 bp Feature: domain Description: DUF1778 Location: 3374-3608 bp Feature: domain Description: DUF1778 Location: 3374-3608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), rve_2 (pfam13333), RVT-AbiP2, Acetyltransf_10 (pfam13673), DUF1778 (pfam08681)