myRT

myRT report for GCA_002972115.1_ASM297211v1

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Seq: JZOU01000003.1 Escherichia coli strain HT2012027 NODE_4_length_9051_cov_39.040218, whole genome shotgun sequence (9115 bp)
Overview 1 RT 1: 9-2868 bp Neighborhood of RT #1 [9, 2882] RVT-GII DDE_Tnp_IS66 LZ_Tnp_IS66 Feature: gene Location: 9-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0-864 bp Feature: gene Location: 1562-2044 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1571-2042 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 571 -2042 bp Feature: gene Location: 2553-2882 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2802-2868 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2802-2868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007)

Seq: JZOU01000036.1 Escherichia coli strain HT2012027 NODE_55_length_4843_cov_42.379517, whole genome shotgun sequence (4907 bp)
Overview 1 RT 1: 3314-4905 bp Neighborhood of RT #1 [3314, 4905] group_II_RT_mat RVT-GII Feature: gene Location: 3314-3619 bp Feature: gene Location: 3662-3994 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3824-3986 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 382 4-3986 bp Feature: gene Location: 3991-4476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994-4450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994-4450 bp Feature: gene Location: 4660-4905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZOU01000044.1 Escherichia coli strain HT2012027 NODE_69_length_8033_cov_41.556705, whole genome shotgun sequence (8097 bp)
Overview 1 RT 1: 235-3901 bp Neighborhood of RT #1 [235, 3906] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 235-498 bp Feature: gene Location: 685-927 bp Feature: gene Location: 1062-2963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1329-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 29-2160 bp Feature: domain Description: Intron_maturas2 Location: 2274-2532 bp Feature: domain Description: Intron_maturas2 Location: 2274-253 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2706-2868 bp Feature: domain Description: HNHc Note: nucleases Location: 2706-2868 bp Feature: gene Location: 3158-3610 bp Feature: domain Description: PRK13732 Location: 3164-3608 bp Feature: domain Description: PRK13 73 2 Location: 3 164-3 608 bp Feature: gene Location: 3673-3906 bp Feature: domain Description: DUF905 Location: 3703-3901 bp Feature: domain Description: DUF905 Location: 3 703 -3 901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZOU01000005.1 Escherichia coli strain HT2012027 NODE_6_length_3985_cov_26.725973, whole genome shotgun sequence (4049 bp)
Overview 1 RT 1: 436-3677 bp Neighborhood of RT #1 [436, 3685] DUF1778 Acetyltransf_10 RVT-AbiP2 Tra5 Feature: gene Location: 436-729 bp Feature: domain Description: DUF1778 Location: 469-703 bp Feature: domain Description: DUF1778 Location: 4 69-703 bp Feature: gene Location: 713-1228 bp Feature: domain Description: Acetyltransf_10 Location: 971-1151 bp Feature: domain Description: Acetyltransf_10 Location: 971-1151 bp Feature: gene Location: 1602-3140 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2031-2487 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2031-24 87 bp Feature: gene Location: 3197-3328 bp Feature: gene Location: 3386-3685 bp Feature: domain Description: Tra5 Location: 3401-3677 bp Feature: domain Description: Tra5 Location: 34 01-3677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1778 (pfam08681), Acetyltransf_10 (pfam13673), RVT-AbiP2, Tra5 (COG2801)

Seq: JZOU01000049.1 Escherichia coli strain HT2012027 NODE_80_length_9092_cov_25.695337, whole genome shotgun sequence (9156 bp)
Overview 1 RT 1: 401-2140 bp Neighborhood of RT #1 [401, 2199] InsE RVT-GII trans_reg_C Feature: gene Location: 401-610 bp Feature: domain Description: InsE Location: 413-599 bp Feature: domain Description: InsE Location: 413-5 99 bp Feature: gene Location: 653-847 bp Feature: gene Location: 817-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1015 bp Feature: gene Location: 1258-1599 bp Feature: gene Location: 1897-2199 bp Feature: domain Description: trans_reg_C Location: 1945-2140 bp Feature: domain Description: trans_reg_C Location: 1945 -2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383)