myRT

myRT report for GCA_002972145.1_ASM297214v1

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Seq: JZOX01000016.1 Escherichia coli strain HT2012050 NODE_20_length_11344_cov_68.796455, whole genome shotgun sequence (11418 bp)
Overview 1 RT 1: 5334-10120 bp Neighborhood of RT #1 [5334, 10120] StbA RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 5334-6296 bp Feature: domain Description: StbA Location: 5337-6285 bp Feature: domain Description: StbA Location: 5337-6285 bp Feature: gene Location: 6283-6735 bp Feature: gene Location: 6965-8665 bp Feature: domain Description: RVT_N Location: 7019-7262 bp Feature: domain Description: RVT_N Location: 701 9-7262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7307-7943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7307-7943 bp Feature: domain Description: GIIM Note: maturase Location: 7994-8228 bp Feature: domain Description: GIIM Note: maturase Location: 7994-8228 bp Feature: domain Description: HNHc Note: nucleases Location: 8459-8609 bp Feature: domain Description: HNHc Note: nucleases Location: 8459-8609 bp Feature: gene Location: 9152-9898 bp Feature: domain Description: PRK13699 Location: 9287-9896 bp Feature: domain Description: PRK1 3699 Location: 9287-9896 bp Feature: gene Location: 9899-10120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: JZOX01000095.1 Escherichia coli strain HT2012050 NODE_259_length_441365_cov_40.903606, whole genome shotgun sequence (441439 bp)
Overview 1 RT 1: 99699-106774 bp Neighborhood of RT #1 [99699, 106774] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99699-99989 bp Feature: gene Location: 99999-101060 bp Feature: domain Description: HTH_29 Location: 100119-100290 bp Feature: domain Description: HTH_2 9 Location: 100119-1002 90 bp Feature: domain Description: HTH_33 Location: 100323-100485 bp Feature: domain Description: HTH_33 Location: 10032 3-100485 bp Feature: domain Description: DDE_3 Location: 100527-100956 bp Feature: domain Description: DDE_3 Location: 10052 7-100956 bp Feature: gene Location: 101162-102700 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101591-102047 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101591-102 047 bp Feature: gene Location: 102757-102888 bp Feature: gene Location: 102923-106774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: JZOX01000105.1 Escherichia coli strain HT2012050 NODE_354_length_41183_cov_36.801132, whole genome shotgun sequence (41257 bp)
Overview 1 RT 1: 31537-34259 bp Neighborhood of RT #1 [31537, 34345] PyrBI_leader RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 31537-31749 bp Feature: domain Description: PyrBI_leader Location: 31621-31747 bp Feature: domain Description: PyrBI_leader Location: 3 1621-3 1747 bp Feature: gene Location: 31752-31970 bp Feature: gene Location: 32220-32990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32223-32637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2223 -3 263 7 bp Feature: domain Description: GIIM Note: maturase Location: 32688-32853 bp Feature: domain Description: GIIM Note: maturase Location: 3 2688-3 2853 bp Feature: gene Location: 33029-33511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33350-33437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 50-3 3 43 7 bp Feature: gene Location: 33494-33958 bp Feature: gene Location: 33959-34345 bp Feature: domain Description: CdiI_3 Location: 33983-34259 bp Feature: domain Description: CdiI_3 Location: 3 3 983 -3 4259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyrBI_leader (pfam08052), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)

Seq: JZOX01000036.1 Escherichia coli strain HT2012050 NODE_46_length_7559_cov_82.133751, whole genome shotgun sequence (7633 bp)
Overview 1 RT 1: 4043-7631 bp Neighborhood of RT #1 [4043, 7631] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4043-4276 bp Feature: domain Description: DUF905 Location: 4073-4271 bp Feature: domain Description: DUF905 Location: 4 073-4 271 bp Feature: gene Location: 4338-4790 bp Feature: domain Description: PRK13732 Location: 4344-4788 bp Feature: domain Description: PRK13732 Location: 4 34 4 -4 788 bp Feature: gene Location: 4985-6886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5252-6083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5252-6083 bp Feature: domain Description: Intron_maturas2 Location: 6197-6455 bp Feature: domain Description: Intron_maturas2 Location: 6197-64 55 bp Feature: domain Description: HNHc Note: nucleases Location: 6629-6791 bp Feature: domain Description: HNHc Note: nucleases Location: 6629-6791 bp Feature: gene Location: 7449-7631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZOX01000047.1 Escherichia coli strain HT2012050 NODE_66_length_6521_cov_85.181717, whole genome shotgun sequence (6595 bp)
Overview 1 RT 1: 1-1738 bp Neighborhood of RT #1 [1, 1738] RVT-GII group_II_RT_mat Feature: gene Location: 1-135 bp Feature: gene Location: 178-372 bp Feature: gene Location: 466-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-925 bp Feature: gene Location: 948-1280 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1110-1272 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1110-1272 bp Feature: gene Location: 1508-1738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)