myRT

myRT report for GCA_002972235.1_ASM297223v1

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Seq: JZNP01000067.1 Escherichia coli strain HT2012068 scaffold67, whole genome shotgun sequence (2662 bp)
Overview 1 RT 1: 148-1954 bp Neighborhood of RT #1 [148, 2049] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 148-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5-1 246 bp Feature: domain Description: Intron_maturas2 Location: 1360-1618 bp Feature: domain Description: Intron_maturas2 Location: 1 360-1 61 8 bp Feature: domain Description: HNHc Note: nucleases Location: 1792-1954 bp Feature: domain Description: HNHc Note: nucleases Location: 1 792-1 954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZNP01000085.1 Escherichia coli strain HT2012068 scaffold85, whole genome shotgun sequence (2159 bp)
Overview 1 RT 1: 79-2157 bp Neighborhood of RT #1 [79, 2157] RVT_N RVT-GII GIIM Feature: gene Location: 79-1368 bp Feature: RT Description: RVT_N Location: 127-370 bp Feature: RT Description: RVT_N Location: 12 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1057 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1261 bp Feature: domain Description: GIIM Note: maturase Location: 1108-12 61 bp Feature: gene Location: 1395-1802 bp Feature: gene Location: 1963-2157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JZNP01000093.1 Escherichia coli strain HT2012068 scaffold94, whole genome shotgun sequence (13927 bp)
Overview 1 RT 1: 6952-10326 bp Neighborhood of RT #1 [6952, 10472] trans_reg_C RVT-GII InsE LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 6952-7254 bp Feature: domain Description: trans_reg_C Location: 7000-7195 bp Feature: domain Description: trans_reg_C Location: 7000-7195 bp Feature: gene Location: 7552-7893 bp Feature: gene Location: 8065-8334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8170-8254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8170-8254 bp Feature: gene Location: 8541-8750 bp Feature: domain Description: InsE Location: 8553-8739 bp Feature: domain Description: InsE Location: 8553 -873 9 bp Feature: gene Location: 8943-10472 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9060-9273 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9060-9273 bp Feature: domain Description: zf-IS66 Location: 9300-9426 bp Feature: domain Description: zf-IS66 Location: 93 00-9426 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9471-10326 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9471-103 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)