myRT

myRT report for GCA_002972245.1_ASM297224v1

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Seq: JZNV01000106.1 Escherichia coli strain HT2012092 scaffold106, whole genome shotgun sequence (1687 bp)
Overview 1 RT 1: 516-1684 bp Neighborhood of RT #1 [516, 1684] group_II_RT_mat RVT-GII Feature: gene Location: 516-848 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 678-840 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 678-840 bp Feature: gene Location: 845-1330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1 304 bp Feature: gene Location: 1424-1684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZNV01000148.1 Escherichia coli strain HT2012092 scaffold148, whole genome shotgun sequence (8819 bp)
Overview 1 RT 1: 6836-8623 bp Neighborhood of RT #1 [6836, 8634] trans_reg_C RVT-GII InsE Feature: gene Location: 6836-7138 bp Feature: domain Description: trans_reg_C Location: 6884-7079 bp Feature: domain Description: trans_reg_C Location: 6884-7079 bp Feature: gene Location: 7436-7777 bp Feature: gene Location: 7949-8218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8138 bp Feature: gene Location: 8425-8634 bp Feature: domain Description: InsE Location: 8437-8623 bp Feature: domain Description: InsE Location: 8437-862 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963)

Seq: JZNV01000040.1 Escherichia coli strain HT2012092 scaffold40, whole genome shotgun sequence (24471 bp)
Overview 1 RT 1: 13345-16772 bp Neighborhood of RT #1 [13345, 16772] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 13345-13482 bp Feature: gene Location: 13515-15020 bp Feature: domain Description: PRK13889 Location: 13518-14118 bp Feature: domain Description: PRK13 889 Location: 13 518-14118 bp Feature: gene Location: 15092-16192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15233-15785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1523 3 -15785 bp Feature: gene Location: 16185-16466 bp Feature: domain Description: HTH_XRE Location: 16200-16365 bp Feature: domain Description: HTH_XRE Location: 16200-163 65 bp Feature: gene Location: 16557-16772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: JZNV01000060.1 Escherichia coli strain HT2012092 scaffold60, whole genome shotgun sequence (7553 bp)
Overview 1 RT 1: 364-3546 bp Neighborhood of RT #1 [364, 3551] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 364-573 bp Feature: gene Location: 708-2609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1806 bp Feature: domain Description: Intron_maturas2 Location: 1920-2178 bp Feature: domain Description: Intron_maturas2 Location: 1920-2178 bp Feature: domain Description: HNHc Note: nucleases Location: 2352-2514 bp Feature: domain Description: HNHc Note: nucleases Location: 2352-2514 bp Feature: gene Location: 2804-3256 bp Feature: domain Description: PRK13732 Location: 2810-3254 bp Feature: domain Description: PRK13732 Location: 2810-3254 bp Feature: gene Location: 3318-3551 bp Feature: domain Description: DUF905 Location: 3348-3546 bp Feature: domain Description: DUF905 Location: 334 8-354 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)