myRT

myRT report for GCA_002972325.1_ASM297232v1

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Seq: JZOA01000111.1 Escherichia coli strain HT2012110 scaffold111, whole genome shotgun sequence (10253 bp)
Overview 1 RT 1: 4442-7926 bp Neighborhood of RT #1 [4442, 7926] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 4442-4594 bp Feature: gene Location: 4664-5566 bp Feature: domain Description: DUF1281 Location: 4733-5261 bp Feature: domain Description: DUF1 281 Location: 4733-5261 bp Feature: domain Description: DUF1281_C Location: 5267-5507 bp Feature: domain Description: DUF1 281 _C Location: 5267-5507 bp Feature: gene Location: 5643-7367 bp Feature: domain Description: RVT_N Location: 5700-5937 bp Feature: domain Description: RVT_N Location: 5700-5937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5988-6636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5988-6636 bp Feature: domain Description: YkfC Location: 6768-6924 bp Feature: domain Description: YkfC Location: 6768-6924 bp Feature: domain Description: HNHc Note: nucleases Location: 7152-7311 bp Feature: domain Description: HNHc Note: nucleases Location: 71 52-731 1 bp Feature: gene Location: 7408-7548 bp Feature: gene Location: 7630-7926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JZOA01000019.1 Escherichia coli strain HT2012110 scaffold19, whole genome shotgun sequence (3359 bp)
Overview 1 RT 1: 250-2928 bp Neighborhood of RT #1 [250, 2954] RVT-AbiP2 Acetyltransf_10 DUF1778 Feature: gene Location: 250-1788 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 679-1135 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 679-1135 bp Feature: gene Location: 2162-2677 bp Feature: domain Description: Acetyltransf_10 Location: 2420-2600 bp Feature: domain Description: Acetyltransf_10 Location: 2 42 0-2 600 bp Feature: gene Location: 2661-2954 bp Feature: domain Description: DUF1778 Location: 2694-2928 bp Feature: domain Description: DUF1778 Location: 2 694-2 92 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Acetyltransf_10 (pfam13673), DUF1778 (pfam08681)

Seq: JZOA01000034.1 Escherichia coli strain HT2012110 scaffold34, whole genome shotgun sequence (8799 bp)
Overview 1 RT 1: 87-3787 bp Neighborhood of RT #1 [87, 3801] PHA02517 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 LZ_Tnp_IS66 Feature: gene Location: 87-338 bp Feature: domain Description: PHA02517 Location: 96-318 bp Feature: domain Description: PHA02517 Location: 96-3 18 bp Feature: gene Location: 369-515 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 381-492 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 81-492 bp Feature: gene Location: 631-1863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 2-1486 bp Feature: domain Description: GIIM Note: maturase Location: 1564-1786 bp Feature: domain Description: GIIM Note: maturase Location: 1564-1786 bp Feature: gene Location: 2481-2963 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2490-2961 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2490-2961 bp Feature: gene Location: 3472-3801 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3721-3787 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3 721-3 787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007)

Seq: JZOA01000039.1 Escherichia coli strain HT2012110 scaffold39, whole genome shotgun sequence (3016 bp)
Overview 1 RT 1: 3-3015 bp Neighborhood of RT #1 [3, 3015] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-182 bp Feature: domain Description: PRK13732 Location: 9-183 bp Feature: domain Description: PRK13732 Location: 9-183 bp Feature: gene Location: 377-2278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 4 -14 75 bp Feature: domain Description: Intron_maturas2 Location: 1589-1847 bp Feature: domain Description: Intron_maturas2 Location: 1589-184 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2021-2183 bp Feature: domain Description: HNHc Note: nucleases Location: 2021-2183 bp Feature: gene Location: 2413-2655 bp Feature: gene Location: 2842-3015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZOA01000073.1 Escherichia coli strain HT2012110 scaffold73, whole genome shotgun sequence (1687 bp)
Overview 1 RT 1: 1-1630 bp Neighborhood of RT #1 [1, 1630] RVT-GII group_II_RT_mat Feature: gene Location: 1-264 bp Feature: gene Location: 358-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-817 bp Feature: gene Location: 840-1172 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1002-1164 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1002-1164 bp Feature: gene Location: 1400-1630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)